Gene detail

Detail information of GWHGAAEX010033/evm.TU.scaffold_265.24

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2049	2.00E-120	Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily)
nr	gi\|255564824\|ref\|XP_002523406.1\|	1.29E-174	RNA binding protein, putative [Ricinus communis]
Swissprot	tr\|Q9LVC3\|PUM12_ARATH	4.00E-124	Pumilio homolog 12
trEMBL	tr\|B9SBN7\|B9SBN7_RICCO	5.00E-175	RNA binding protein, putative {ECO:0000313\|EMBL:EEF38985.1}
TAIR	AT5G56510	2.00E-120	pumilio 12

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000263	570697	577984	-

Transcript Sequence
>GWHTAAEX010033 TTCATTCTGTTCTGTCATGGAAGGCGGTATAGTTCAGCAAGATTTTGATGAACTCGATATGCTCCTTGAGCAAATTCCAAATGCAACTTCTGGGAACCATCTTTTGAAGAAATGTGGCCTTGCCATTCCTTCTAAAGAGTTCCCTGTAGCTTCTATTGGAAGGGAGGAGTTTTCTTCTAGGGACGAGGTGACTAGCCTACCTTCTTTTAGCAGCAGAATTTCTGAACCATATACGTTTCCTCAGCCTGCTATGAGTCCATTGGGTGTGCCTTCTAATGGTGGTACGGCCTTTTCAATCAGTCCAGAACATCAGAAACTTGAAAGAATAGCAAGTAGTAGTTATGAATTTCCTGAAGTGATTATTCATAGGGAAGATAATTCGAATTTACCAGATGAAATGTCTTTAACACTGTTTATAGAGGAAATGAGCATTAATGAGAATCTGACATCAAAACCATGTTCTCCTTCTCCAGTCAAGAACTTGAATCTTGCTTTGTTACATGGTTCTGAACCAAGTCAAATCCCAGAAAGTTTACGGGGTAACTTTTCTGAACATCCGGTCATTTGTCCGATGAATTCCATGGCAATTCCTGCAAATCAAGATATGAATACTTATCAGCTGCTTCCAAGCGCACCAGGATTACAATTACCAAATATTTATCAGCCTAATTACTATGCTGATACTCAATCCCATCCTTCCCATTTATCTAAGCCAGTTGTGTTGTGGAATGGTATGGAAGAAGAAGGATTTGGCCAACTCTGTCAGCAGTACTTACATGCACAACATTTACAAAATCAAAGATCTGAAGTTGTACAAGTTCAGAAAAGTATGAAATTTGGCTTGGGGCCTTACCATGGAAATACTTTGCATCAAAGTTTTGAGTTTCCTATGTCTCAACAGCATGAGTCTTGTAATCAAAGTCAATATTCGCATGACAATTCAAATTGTGATAAGTCTTATCTGTTGGATTATTGCCAATACCAACACCAACACCAGGAGTCTACTAGGAGACATAAAAACTTATGTTTTTCCAACGGACAAAACATATTCTCTTCGAATGGTCTGAGTTACCCTGCCATGGATTTTCAAGGCCATCAGATTTTTGATAAAGTTGGAAAACAAAGTGTTCCTGAAATAAATTTAATGAAGTCACATGGCGTGAATTCATTTAGGGTTCTTAGGTCCAATCCTATTGCACCTGATCAAGCTTTGTTCTTTGATGAAAACTATTTTAGGTGGTTAAATGGCAATGCCCATTCGCCTCATGGTTTGAATAATGGATCCTTGAAGTTGGATAAACAACTATATACAAGTTCATGTCCAGAGATTATTTTCTCTTCCAGGACAATGTTGAAAAGATATAATTCAGTTGATGAAGTTGCGGGGAGGATTCTTATGATGGCAAAGGATCAGCATGGATGCCGTTTTCTACAGAAAAAATTTGCAGAAGGTAGTCAGGAAGATATCAACAAGATCTTTACAGAAATTATTTTCCACGTTGTTGAGCTCATGACTGATCCTTTTGGGAACTATCTTGTTCAAAAGCTTCTTGATGTATGCAATGAAGAGCAATTGATGCTCATACTCAAAGTCATTACAAGAAATACAGATGAACTCATTAAAATCTCATGCGACATGCATGGGACCCGTGTCGTGCAGAAGATAATTGAAACTGTACGAACTCCAGAGCAGATTTATGTAGTTGTATCATCTTTAGAACCTTACATTGTTTCGGTCATGAAGCATATCAATGGTAATCATGTTGCACAACGATGCTTGCAATATCTTTCCAAGTATAGTAAGCTTCTCGTCGATGCTGCGATCTCTCATTGCGTCGAGCTGGCGACCGACCGCCAGGGCTGCTGCGTGCTCCAGAAATGCCTGGTGCATTCGGATGACGATCAGAGGCTGGTGCTTGTTGCTGAGATCTCATCTTTCTCGCTATTTCTTTCCAAAGATCAATATGGCAACTATGTGGTCCAATACATCCTCGAATTGAGAGACCCGTGGGCGACCGCCGCCGTTCTGAAACAGCTTGCGGGAAATTACGACCATCTTGCGGTTCAAAAGTACAGCAGCAACGTGGTCGAAAAATGCCTCAAGCTTGCAGGAAAGGAAGATCGCTCCGCCATCATTCGGGAGATGATAAGATCTTCACTGCTCCTTCAGATACTTCAGGATCCGTACGGCAATTACGTCATTCAAACTGCATTAACTGAATCCAAGGTGCAAAGAGATCTTCATGCTGATCTGGTAGAGGCGATCCTATCACATTCTCCTGCGCTCCGAAGCAGTCCTTATGGGAAAAAAGTTCTCTCCAATGCCTTACTGTCCTCGAAGAAGTAGAACTGTCTCAACACTTATTTATTTGCACAGACAACCTTTCTTTTTTCTCTTTGTTTTTTTTGTTGCACAGTACAGTGTTGACTTATATGTGAAAGCCAAATGAAAAGAAAACAAAAAAGATAGGAAGTTGCATTAATGGGGCTGTAGAGAAGGTTTAAAAGGAATATGGTTGAATTTCTAAAGCTTTGATATATATATATATATATATATATAGTTGGAAACTAGTTTTTGAAGAAGAATTGGAGGTTTAATTGCCTTTTTTGTGTAAAAAAAAGAAAAAATATGCCTTATTTTAGTGTTTTTTTTTTTATAATGTTGTCATTAGATCACAAGCTATTTCAGCTTGTTTTGCATTACACTTGTATTTTGCTCTTTTGAGCCTCAAGTTATTGCTGTATAAAATCTGG

Network for GWHGAAEX010033

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00806.18	PUF	457	488	0.0008
PF00806.18	PUF	494	524	2.30E-10
PF00806.18	PUF	532	560	3.40E-07
PF00806.18	PUF	604	630	1.30E-05
PF00806.18	PUF	644	660	3.70E-05
PF00806.18	PUF	716	741	0.00014

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.710
SRP064423	SRR2545915	Juvenile tuber	2.130
SRP108465	SRR5643513	five period of Gastrodia elata	3.540
	SRR5643514	five period of Gastrodia elata	3.750
	SRR5643515	five period of Gastrodia elata	2.500
	SRR5643524	five period of Gastrodia elata	3.590
	SRR5643525	five period of Gastrodia elata	0.320
	SRR5643528	five period of Gastrodia elata	0.170
	SRR5643658	five period of Gastrodia elata	0.230
	SRR5643659	five period of Gastrodia elata	3.670
	SRR5643660	five period of Gastrodia elata	3.280
	SRR5643661	five period of Gastrodia elata	3.060
	SRR5643662	five period of Gastrodia elata	3.900
	SRR5643663	five period of Gastrodia elata	3.260
	SRR5643664	five period of Gastrodia elata	4.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.700
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.430
SRP279888	Gastro	Gastrodia elata tuber	3.98
	Juven	Juvenile tuber	9.59
	Mother_Gastro	Mother tuber of Gastrodia elata	1.53
	Mother_Juven	Mother tuber of Juvenile	3.36