Detail information of GWHGAAEX010039/evm.TU.scaffold_267.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 4.00E-91 | FOG: PPR repeat |
| nr | gi|743758852|ref|XP_010929128.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q7XJN6|PP197_ARATH | 1.00E-91 | Pentatricopeptide repeat-containing protein At2g40720 |
| trEMBL | tr|U5D285|U5D285_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN19736.1} |
| trEMBL | tr|U5D285|U5D285_AMBTC | 6.00E-14 | Uncharacterized protein {ECO:0000313|EMBL:ERN19736.1} |
| TAIR | AT2G40720 | 4.00E-91 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000262 | 582124 | 584929 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010039
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 119 | 144 | 0.00022 |
| PF01535.19 | PPR | 219 | 247 | 0.034 |
| PF01535.19 | PPR | 294 | 319 | 0.08 |
| PF01535.19 | PPR | 322 | 345 | 0.077 |
| PF01535.19 | PPR | 394 | 415 | 0.41 |
| PF01535.19 | PPR | 428 | 450 | 0.12 |
| PF01535.19 | PPR | 525 | 553 | 0.00014 |
| PF01535.19 | PPR | 628 | 657 | 0.0016 |
| PF01535.19 | PPR | 700 | 722 | 0.0024 |
| PF13041.5 | PPR_2 | 726 | 772 | 5.70E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.450 |
| SRR2545915 | Juvenile tuber | 1.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.030 |
| SRR5643514 | five period of Gastrodia elata | 1.640 | |
| SRR5643515 | five period of Gastrodia elata | 0.860 | |
| SRR5643524 | five period of Gastrodia elata | 0.990 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.050 | |
| SRR5643658 | five period of Gastrodia elata | 0.020 | |
| SRR5643659 | five period of Gastrodia elata | 1.710 | |
| SRR5643660 | five period of Gastrodia elata | 1.450 | |
| SRR5643661 | five period of Gastrodia elata | 1.380 | |
| SRR5643662 | five period of Gastrodia elata | 0.820 | |
| SRR5643663 | five period of Gastrodia elata | 1.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.710 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.00 |
| Juven | Juvenile tuber | 0.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.02 | |
| Mother_Juven | Mother tuber of Juvenile | 0.07 |