Gene detail

Detail information of GWHGAAEX010042/evm.TU.scaffold_268.3

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2197	4.00E-150	Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins
nr	gi\|695026292\|ref\|XP_009400436.1\|	2.05E-167	PREDICTED: uncharacterized protein LOC103984626 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0RQV7\|M0RQV7_MUSAM	7.00E-165	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P09770_001}
TAIR	AT5G53570	4.00E-150	Ypt/Rab-GAP domain of gyp1p superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000265	57350	61879	-

Transcript Sequence
>GWHTAAEX010042 CGCAAACTAGTGAGGGAGTATTTGTGCTAAAATGATCATAAAAGAATTTCAAATATCTTATAAATAATTATTAAGACAAATGTAATACAATGAAATGGGCATTTTAATAGCTTTGGCATTTAAGATTTCAAAGGGATTACCAGCCCCAAACTAATCTCCTTCTTCATTTCCGTAATTTGGACGGAATCAACGAGCATGTACTTGTTATTTTGTGCCACATGCCAAAGCCAAGGATTCTAAAACCGTCCCCTTCCTTTTTCATATATTATTATAATGCTGCCCTTTTCAAAAAAATAATGGAGGTGGCACGGTTTAAAAGTTCTATCCAAAGATTTACTCTCTCAAGAAACTGAGTAGACGAAGATATTCAAAGGATGCTACGCTTCCATCCATGGTTGTTCCGGAAGAATCCTCTCCGTTACTGGCGCGATGAATCAATCACTCCGTAAAACCTCTGCTGAGTCCATAGTGGCGTCGAACTGTTTTTAGCTCTTGATCTACGGCGGCAGCGGGACCTGGACAAAGAACGGAGGGCAGCATCGCTTTATCCGCCCGTTTCTTTTCTTATTTTTTCTGGGATCAGCGCAAAAGGGACGACGGAGTTTGCCCAGGATACCTCGTTTGGTCTCGGCAATATAGGGCAGGGCACAGAGACAATAGATGAAAGCTCTGAAACGATCTAACACTTCTACCTCGAATCGAACCTCCTCATCGTCTCCTGCGCTGTCCTGGATTCATTTGAAATCTCTTCTCATTTTTGGCTCGTCCCCCGTTCACGATCGCGGTAGTCTTAAAGTACTATGGTCTCGTGCCAAAAGAAGAGGGTTTTCTCATCGCTATTGGAATAGTCTATTTACACCAGATGGAAGGCTTCATGACGGTGGCATCAGGCTTTTAAGAAAGACCAGAAGTAAAGGAATTGATCCAAGCATTAGGTCAGAGGTTTGGCCTTTCCTCCTTGGCGTGTATGATCTTAACAGCACGGAACTGGAAAGGTGTGCAGTTAAATTGCGCAAATGGAAGGAATACGAGAATCTTAGACTGCGATGCCGAGCGTTGTCAAACCATCATTGCCGTCACGTAGTGAGGTACAGCCGACGAGTGGAGCAGGAGCAGCGCCATAACGTGATTGAGGATCTGTTCTGGTCCGAGGATTTCTCCGCCTCCGTGAAATGTCCGGTTTTCGACGCGACCCCTCCGCGGCGGGAAGAAGTAGATGAAGAAGAAGAAGAAGATGATGATGAAGATGATGATGATGATGATGTTGATGATGATGATGATGATGAATCGTTATCGGAAATGGATTTCTCGAGGGAAATATTGATAGAGAATGCAGGGGGAAGGAGGGGAACGGCGGAAGAGTTCAGAACATGGCAGCGCATAATACGGCTGGACGCGATCAGAGCGGATGCGGAGTGGGCGGCGAAGAGCGGATACTCGGCGGTGTCTCGGGAAACGGCAGAGGAATGCGCGGGAAGGGCGGGGCTGAAGGACTACGAGCACCTGGAGCCGCGCTTGGTGCGTCACGCCTCGCGGCTGGTGTGTGTGCTGGAGGCGTACGCGGTATACGACCCGGAGATAGGGTACTGCCAGGGGATGAGCGACCTGCTGTCGCCTCTGCTGGCTGTGATGGAGGACGACTACGAGGCCTTCTGGTGCTTCGTCGGCTTCATGAGAAAGGCCAGGCAGAACTTCAGCAGGGTGAACGAGTCCGGCATCAGCAGGCAGCTGGCCGCCGTCTCGCGCATCATCCGCCTCGGGGACGGCCAGCTCTTCAGACGCCTGGAGAGGATGCAAGCGGAGGATTGCTTCTTTGTCTACAGGATGGTGCTGGTTCTTCTCAGGAGGGAGCTCAGCTTCCAGCAGACGCTCTGCCTCTGGGAGGTCATGTGGGCCGAGCAGGCCGCCCTTCGCTCCGGGATTGGGACCGCCGCCTGCGGCAGGCTCACCATGAGGTCCCCGCCCACCGACGATCTCCTCCTCTACGCCATTGCCGCCTGCGTCATCCACACCAGGAAGCTCTTCCTCGATAGCTGCGGAACCTTGGATGAGATCATCAAGGAGTATGCCAACATGGCCGGGAAGCTCGACGTTTGGACCCTCTTGGACCATGCCCATCATCTCGTCCTGACTCTCAGAGACAAGATCAAACTATCTCCTTGATTTTTCTCTTTCTTTTTTTTTTTTTTT

Network for GWHGAAEX010042

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00566.17	RabGAP-TBC	291	414	5.30E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.480
SRP064423	SRR2545915	Juvenile tuber	15.300
SRP108465	SRR5643513	five period of Gastrodia elata	37.010
	SRR5643514	five period of Gastrodia elata	37.900
	SRR5643515	five period of Gastrodia elata	31.260
	SRR5643524	five period of Gastrodia elata	33.470
	SRR5643525	five period of Gastrodia elata	60.970
	SRR5643528	five period of Gastrodia elata	46.610
	SRR5643658	five period of Gastrodia elata	56.070
	SRR5643659	five period of Gastrodia elata	20.550
	SRR5643660	five period of Gastrodia elata	27.950
	SRR5643661	five period of Gastrodia elata	24.550
	SRR5643662	five period of Gastrodia elata	33.730
	SRR5643663	five period of Gastrodia elata	25.160
	SRR5643664	five period of Gastrodia elata	48.690
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	65.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	71.990
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.740
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	49.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	55.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	55.650
SRP279888	Gastro	Gastrodia elata tuber	27.74
	Juven	Juvenile tuber	34.47
	Mother_Gastro	Mother tuber of Gastrodia elata	88.81
	Mother_Juven	Mother tuber of Juvenile	46.98