Detail information of GWHGAAEX010043/evm.TU.scaffold_268.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|186681693|ref|YP_001864889.1|6.00E-40hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
KOGKOG03180WD40 repeat stress protein/actin interacting protein
nrgi|672196789|ref|XP_008776897.1|0PREDICTED: LOW QUALITY PROTEIN: 66 kDa stress protein-like [Phoenix dactylifera]
Swissprottr|Q9FLX9|NLE1_ARATH8.00E-12Notchless protein homolog
trEMBLtr|M0RJS3|M0RJS3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P19980_001}
TAIRAT3G180600transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002656219074979+
Transcript Sequence

Network for GWHGAAEX010043

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD4052840.0013
PF00400.31WD401812110.063
PF00400.31WD402262613.20E-06
PF00400.31WD405365640.00062
PF00400.31WD405786070.039
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms55.820
SRR2545915Juvenile tuber51.080
SRP108465SRR5643513five period of Gastrodia elata81.960
SRR5643514five period of Gastrodia elata94.510
SRR5643515five period of Gastrodia elata76.580
SRR5643524five period of Gastrodia elata84.960
SRR5643525five period of Gastrodia elata72.890
SRR5643528five period of Gastrodia elata76.200
SRR5643658five period of Gastrodia elata85.720
SRR5643659five period of Gastrodia elata52.890
SRR5643660five period of Gastrodia elata55.160
SRR5643661five period of Gastrodia elata56.320
SRR5643662five period of Gastrodia elata53.840
SRR5643663five period of Gastrodia elata51.190
SRR5643664five period of Gastrodia elata54.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1101.770
SRR6049655Rhizomagastrodiae_C368-T10_good_166.490
SRR6049656Rhizomagastrodiae_C368-T07_good_1102.770
SRR6049657Rhizomagastrodiae_C368-T07_good_186.740
SRR6049658Rhizomagastrodiae_C368-T04_good_169.620
SRR6049659Rhizomagastrodiae_C368-T04_good_168.740
SRR6049660Rhizomagastrodiae_C368-T01_good_163.890
SRR6049661Rhizomagastrodiae_C368-T04_good_163.860
SRR6049662Rhizomagastrodiae_C368-T01_good_1114.300
SRR6049663Rhizomagastrodiae_C368-T01_good_189.200
SRR6049664Rhizomagastrodiae_C368-T10_good_1168.010
SRR6049665Rhizomagastrodiae_C368-T10_good_1168.010
SRP279888GastroGastrodia elata tuber 67.54
JuvenJuvenile tuber152.55
Mother_GastroMother tuber of Gastrodia elata 85.60
Mother_JuvenMother tuber of Juvenile 126.55