Gene detail

Detail information of GWHGAAEX010045/evm.TU.scaffold_268.6

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|374307508\|ref\|YP_005053939.1\|	3.00E-09	serine/threonine protein kinase [Filifactor alocis ATCC 35896]
KOG	KOG2137	0	Protein kinase
nr	gi\|743755754\|ref\|XP_010913247.1\|	0	PREDICTED: SCY1-like protein 2 [Elaeis guineensis]
Swissprot	tr\|Q9LT35\|NEK6_ARATH	8.00E-11	Serine/threonine-protein kinase Nek6
trEMBL	tr\|M0SHN3\|M0SHN3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P25170_001}
TAIR	AT1G71410	0	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000265	86007	136300	+

Transcript Sequence
>GWHTAAEX010045 CCTAATTATCCATATCTTTTAATCATTTTTATTATTCACCGAGAGAGAGAGAGAGCCGGGAACTTAGAAGTGGGATCCAGACGGTATGGTTGTAGGTTTTATTGTTTCTACTTGATCCATGTTGTTCCGGATATAATTGAGAGTAAACGGGATTGCTGATCACCGATTCTCGCCGGCGGGAGCCCGCCCAGCATGTCTTTGAATATAAAGAGCCTGACGCAGGCGCTGGCAAAAACTGCCGCCGTGATCGAGAAGACAGTTCAGACCACAGTTCAGGAGGTGACGGGACCACGCCCTCTTCAGGACTATGATCTCCTCGACCAGATCGGATCCGGCGGCCCCGGCCTCGTATGGAAGCTCTATGCTGCGCGGCCCCGTTCCTCTGCACCCTCCACGCAGTACCCTATCGTCTGCGTCTGGCTGCTAGACAAGCGCACGCTCTCGGAGGTTCGCACCCGTGCTGGCCTTTCTAGGGCTACAGAGGATGGCTTCCTCGACGTTATTCGAGCCGACGCGTCACGCCTCTTGCGCATCCGCCACCCGGGAGTCGTTCACGTCGTGCAGGCCCTTGACGAGACCAAGAATGCCATGGCCATGGTCACGGAGCCGCTTTTCGCATCTGTTGCTAATACTATTGGCCTCCTGGACAACATTCCCAAGGTTCCCGCGGAGCTTAAGGGCATGAAAATGGGGCTGTTGGAGATCAAACATGGGCTGCTTCAGATTGCTGAATCTTTAGATTTTATCCATAATAATGCACATCTGATTCATCGAGACATCTCCCCAGAGACTGTATTCATTACTTCTACTGGAGCTTGGAAGCTGGGTGGGTTTGGTTTTGCCCTCCCTATCGACCAAGCCTCTAGTGGCTTGACGGCAACTCAGACATTTCATTATTCGGAATATGATGTTGAGGATTCTATTTTGCCACTTCAGCCATCTCTCAATTATACTGCTCCTGAATTGGTCCGTAGCCAGTCTAACATTGTTGGATACTCTGCTGATATTTTCAGCATCGCATGTCTTGCTTACCATTTAATTACTCGGAAGCCGTTACTGGATTGCCATAACAATGTTAAAATGTATATGAATAGCTTGGCATACTTAACGAGTGAGTCATTCTCACCAATTCCCTCAGAGTTGATTATGGATATTAAAAAAATGCTATCCAGTAGCGAGACTTCAAGACCGAGTGCAATGGAATTCACCGGATCTTCCTTTTTCCGTGATGACACTAGGTTGCGTGCTCTTCGGTTTTTAGATCATATGCTTGAGAGGGATAATATACAGAAAACAGAATTTTTGAAAGCATTATCAGATATGTGGAAAGACTTTGATGCTCGCATTTTGCGATACAAGGTGCTTCCTCCGCTATGCGCAGAACTTCGGAACTTGGTTATGCAGCCAATGATATTACCGATGGTTCTTACAATAGCGAAGTCACAGGATAAAAGTGATTTTGAGGTTTCAACGTTACCTGCACTGGTTCCCGTGCTAACTTCTGCATCTGGTGAAACACTTCTGCTCCTTGTGAAGCATGCTGACCTACTTGTTGACAAGGCTACTCAAGAGCATTTATTATCTCACGTTCTTCCTTTGCTTGTTCGGGCTTATGATGATAGTGATACTCGTATCCAAGAGGAGGTTTTACGGAGAACGCTACCCCTTGCAAGGCAACTTGAAGTGCAGCTTGTGAAACAAGCTATCTTGCCTCGCATTCATGGTTTAGCTCTGAAGACTACAGTTGCAGCAGTGAGGGTGAATGCTCTGCGTTGCTTGGGTGATTTGATACCTTTACTTGATAAACAAGCCGTGTTGGACATTTTACAAACTTTGCAGCGCTGCACAGCTGTGGACCACTCTGCACCAACTCTGATGTGCACACTTGGAGTTTCACATGCAATTTATAAACAGTGTGGCCTAGAATTTACTGCGGAGCATGTGCTTCCCCAAGTCTTTCCACTTCTTATTGCACAGCAACTGAGCGTTCAGCAGTTTGCCAAGTACATGCTTTTTGTCAAGGACATTTTGAGAAAGATTGAAGAGAAGAGAGGTGTGACTCTGAACGAGAATGCGACCACTGGAGCAAGAATCTCTTCTCCGCCATCAAATGAGCTCCAGTCTGAACCATATCAAAAGAAACAAGGAGTCCTGGTTGCGAAGAAAACCAATTATTCTTGGGATGAAGATTGGGGCCCAACACACCGGGCTTCGTCTTCAGCTGCTGCCTCATCTTCAGCATCAATAGCTGCACCTTTGCAATCTTTGAAGCCTGCCATCAGCCCACAAATATTACCGATTTCTTCTGTTAATAATAATGTTGAGTGGCCGCCGCCACCTCCAAATTTTTCGTCTTCTTCAGTCTTTGTTCCCCGGACAACATTTATAGCTGCTGATGATAAGCTGGTGAATCAGAGCTCTGGTGGGTCTTCCGATAAAGCTTTCAATGAGATAGATCCGTTTGCCGATTGGCCTCCTCCTTCTAGGCGGAGCCATAGTAATGTAAATACTTCATATAATAATATCAGCAGAAATGCTGCCGACTTTTCTTTGACGGCTGAGTCGAACCAATTGAAACCAGCCGGGGGTCTGCAACCTATTGGCAGAAAGGGTTCAATCTTTGTTTCTGGGAGCAGTGGGCATACGTCTGCCACTCCTAAGCTTGCTCCTCCCCCATTAACAGCTGCTGGATTCGGGCGAGGGAGAAATCATGGGAATAATATTAATAATAATAATAACAGCATTAGCCATCCTCCAGGTTTGTCGGTGCCAGAACAACCGCCTATTTTGGATTTGCTTTAAGGTTTAAGGATGCTTGTTTTGTAAAACCATTTTTCAACTTTTGTTTGAAGGGCCGCTTCGTCGGTTCTTTTTCTTTGTTTTGTCAATCCTCAGTTTTTTTTATCTTTTATACTCATTTGTTTATTTTGATCAAATTTTGTCAGAGCAAAAATAATTTCTTATAAATGCGACGTGGCATTTTCATTTTATTGTTTATATTATTAATTATGTTTATAGTCATTAGACGGGATGAGATTTAAT

Network for GWHGAAEX010045

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	104	344	1.50E-23

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	SCY1_SCYL2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	51.040
SRP064423	SRR2545915	Juvenile tuber	37.800
SRP108465	SRR5643513	five period of Gastrodia elata	33.420
	SRR5643514	five period of Gastrodia elata	36.970
	SRR5643515	five period of Gastrodia elata	33.470
	SRR5643524	five period of Gastrodia elata	35.990
	SRR5643525	five period of Gastrodia elata	35.640
	SRR5643528	five period of Gastrodia elata	39.660
	SRR5643658	five period of Gastrodia elata	49.920
	SRR5643659	five period of Gastrodia elata	32.390
	SRR5643660	five period of Gastrodia elata	35.600
	SRR5643661	five period of Gastrodia elata	33.330
	SRR5643662	five period of Gastrodia elata	33.890
	SRR5643663	five period of Gastrodia elata	37.010
	SRR5643664	five period of Gastrodia elata	40.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.820
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	47.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.700
SRP279888	Gastro	Gastrodia elata tuber	38.88
	Juven	Juvenile tuber	48.18
	Mother_Gastro	Mother tuber of Gastrodia elata	39.11
	Mother_Juven	Mother tuber of Juvenile	58.56