Gene detail

Detail information of GWHGAAEX010050/evm.TU.scaffold_268.12

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2328	Chromosome condensation complex Condensin, subunit H
nr	gi\|672142204\|ref\|XP_008794957.1\|	PREDICTED: condensin complex subunit 2 [Phoenix dactylifera]
Swissprot	tr\|Q564K3\|CND2_ARATH	Condensin complex subunit 2
trEMBL	tr\|D7TEB5\|D7TEB5_VITVI	Condensin complex subunit 2 {ECO:0000256\|PIRNR:PIRNR017126}
TAIR	AT2G32590	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000265	301491	309712	+

Transcript Sequence
>GWHTAAEX010050 GCAGTTCCACCCGGCAAATTTCAAATGCAATGAAATAGGCGAGGGCAGTGAGGAAGTGAAGGCGAGGGCAGTGTGGAATTGAAAGAGATTCCAGGCTTCGTCGATGGAAAACAAAGCAGAAGTCTAGCAGGCCAATAATATCTAGCCATGTCAACTACAGAGAGCGATTCGGCGACTCCGACGAACTCCAAGGTGGTGCCCCTGAGCCTGGCTTCTCGTACCCCCACTGTTCTGGTGCTTTGCGCCAACGACGACAACCTTGAGCGGGAGCAGGCTCGAGCCGCCCGCATTGCTTCTATTCGACTCAAGTCAAGCGCTACCGCCGGCCCTAGCTCCTCTCAACCCCAATCCAAAATTCTCAACCACTGCCAAATCGCGGATCTTCTTCAAAACTGCCTCAAGCTTGCCAGCGAGAATAAGATTAATCAGAAGAACACATGGGAGCTGAACCTGATAGACCATCTTAGCGAGATCATCCAAACGAAACCTGAAGTTGAAGACGCAGAAACCAATTTCCAGAAGGCAAGCTGCACTCTGGAAGCGGGGGTGAAGATATACTCATTGAGAGTTGATTCTCTGCATTCGGAAGCTTATAAGGTTCTTGGAGGGATCAATCGGGTTGGCCGAGAACATGAGGATGAGAATGTGGCAGAAGAAAACCGGGCACATGATGATACCAAGCACAAAGAAGGATTTTCTAGGAAAGATTTGGAGAGGAAGCTATCACCTTTATCAACACTGGCAACCTCTTTTGAGGCATTAAACATAAAGAAGTTTGATGTGGCTTTTACTGTGGATCCTCTTTACCATCAAACATCTGCCCAATTTGATGAAGGTGGTGCCAAGGGCCTTTTACTAAACAACCTTGGGATATATGGAAATTGTCGTGTTCTCTTTGATTCATTTGAAGTACCTGAGAAGTGTATCATGAAAGATACAGAGAGTGGCAAATCAGAGCTGATTGACTTATCATTTGCTAAAGAATACATTGACCAGATGATGATTAATATGCCTAAAATGGCTGAAATTTCACCCACATTAAGGGACATTATAGACAAATTTGGTGAAAAGAACCAGAGACTATTTGATGAATTCCCTGTTGAGAAATATTCTTACAATCACGGCGAGATAGATGATATTAATCATCCCAATGTGAACGAAAATTGTGATTATTGTCCTGATGCTTTTGATCATGATGACCATACAAGTGTGGTTGATGATAATTTAAGAAGCTCAGGGAGAGATTTTACCAGCCATCAAGAGGACTTTGGAAGTCAGCCATTGCATGATCAAGACATTGAGATGAAACCTGATGAGGTTGTTGATTTTTTATCTTTTAGCTTAGGCTTTTCTTCTAGAACAAATGCTTGGGCTGGCCCTGATTACTGGAAATATAAAAAATCTAAAGGTTTGGAACGGGAAGATTTTGTTGAAAAGCATGAAATTGCAACTAAAAAAACAAAAGCAAAAAAACTGACTTTTGATATTGATTTTTCAAAATCTCTTGAAATGGAGTTTCCTAATATCTTTGACCCACCAAAAAACCCAAAATCTTTGCTCTTACCAAACTATAGAGCACCCTGTAACATCATTCTTCCAGAAGACTGTCATTACAAACCGGAAAGTCTTGCAAATTTATTTATTCTTCCGGACGTTATGTGCTTTGGCAAGAAATCAAAAAAATTGGAAGAGGAACCGGAAAGACCAAATGGCGATCTTGTTTCGTGTGCATCATGGGACAAAGATAGTGTTGATGATAATCAACGTGACGATGGAAATTTTAATAGCGATATAGATGAGCCAGGAAGCCTTGTTCGTATACCAAGGCAGGTTAAGAAAATAGATGTGCAATATGATAGAGTATCAAAACAAGTTGATGTTCAGGCATTGAAAGAGTCGCTTTGGACGACCATACTCTCATCAGTTAAGATGGTTGATCCAGCTGGAAGCCATCAGGAATCATCATCGTCATCATCGTCAGTCGTGTCTCTGAGGCAGGTAATGCAGCACATGCACGAGGATGAAGCTGCGCTTCCGACAGATTCTTCTTCTTCTTCTTTATCACAAAAGGATGTCATTTCGCCACATCTGGTCTTCATCTGTCTCCTGCATTTAGCTAATGAGCATGATCTGATCCTTCATCATCCCCAAGATTTGGATGATGTTCACATCCTTCTCTCTTCTTAAGCCGGCGGTGCTGTTTGCTTCCAATTGCAACCTTCAGCATGCGGATATCAGTTTATTACTCGTGTCAGTTTTTGTAACCTTTTGGCCCCTTTCGTTTTGTAACATGCAGAACCTTTTCTTTATACTTAGTAGTGTCGTTGTGTTTGAATTTTTCTGTGCGAAACAAATAAATGAAGATATAGTTTTATGTTACCGTAAATATTAAATATTAACGTGCAAATATCAGC

Network for GWHGAAEX010050

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05786.13	Cnd2	22	540	3.80E-84
PF05786.13	Cnd2	538	675	1.60E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06676	BRRN1, BRN1, CAPH	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0007076	Biological Process	mitotic chromosome condensation
GO:0000796	Cellular Component	condensin complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.420
SRP064423	SRR2545915	Juvenile tuber	19.380
SRP108465	SRR5643513	five period of Gastrodia elata	12.110
	SRR5643514	five period of Gastrodia elata	14.080
	SRR5643515	five period of Gastrodia elata	9.860
	SRR5643524	five period of Gastrodia elata	13.120
	SRR5643525	five period of Gastrodia elata	6.460
	SRR5643528	five period of Gastrodia elata	3.770
	SRR5643658	five period of Gastrodia elata	6.420
	SRR5643659	five period of Gastrodia elata	13.720
	SRR5643660	five period of Gastrodia elata	17.160
	SRR5643661	five period of Gastrodia elata	14.760
	SRR5643662	five period of Gastrodia elata	14.300
	SRR5643663	five period of Gastrodia elata	13.770
	SRR5643664	five period of Gastrodia elata	14.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.300
SRP279888	Gastro	Gastrodia elata tuber	21.03
	Juven	Juvenile tuber	22.07
	Mother_Gastro	Mother tuber of Gastrodia elata	12.30
	Mother_Juven	Mother tuber of Juvenile	12.97