Detail information of GWHGAAEX010058/evm.TU.scaffold_269.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|357384683|ref|YP_004899407.1|4.00E-48ribosomal large subunit pseudouridine synthase C [Pelagibacterium halotolerans B2]
KOGKOG19191.00E-135RNA pseudouridylate synthases
nrgi|743861201|ref|XP_010943215.1|1.24E-170PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1 [Elaeis guineensis]
Swissprottr|Q9LT72|PUS4_ARATH4.00E-136RNA pseudouridine synthase 4, mitochondrial (Precursor)
trEMBLtr|D7UBZ2|D7UBZ2_VITVI7.00E-166Putative uncharacterized protein {ECO:0000313|EMBL:CBI40257.3}
TAIRAT3G194401.00E-135Pseudouridine synthase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002683828556230-
Transcript Sequence

Network for GWHGAAEX010058

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00849.21PseudoU_synth_21793464.20E-25
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0009451Biological ProcessRNA modification
GO:0001522Biological Processpseudouridine synthesis
GO:0003723Molecular FunctionRNA binding
GO:0009982Molecular Functionpseudouridine synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.160
SRR2545915Juvenile tuber3.640
SRP108465SRR5643513five period of Gastrodia elata5.780
SRR5643514five period of Gastrodia elata6.430
SRR5643515five period of Gastrodia elata5.480
SRR5643524five period of Gastrodia elata7.230
SRR5643525five period of Gastrodia elata2.100
SRR5643528five period of Gastrodia elata1.640
SRR5643658five period of Gastrodia elata1.850
SRR5643659five period of Gastrodia elata3.480
SRR5643660five period of Gastrodia elata2.750
SRR5643661five period of Gastrodia elata3.680
SRR5643662five period of Gastrodia elata2.890
SRR5643663five period of Gastrodia elata2.110
SRR5643664five period of Gastrodia elata3.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.310
SRR6049655Rhizomagastrodiae_C368-T10_good_15.710
SRR6049656Rhizomagastrodiae_C368-T07_good_17.550
SRR6049657Rhizomagastrodiae_C368-T07_good_15.990
SRR6049658Rhizomagastrodiae_C368-T04_good_15.760
SRR6049659Rhizomagastrodiae_C368-T04_good_13.850
SRR6049660Rhizomagastrodiae_C368-T01_good_17.380
SRR6049661Rhizomagastrodiae_C368-T04_good_14.720
SRR6049662Rhizomagastrodiae_C368-T01_good_19.150
SRR6049663Rhizomagastrodiae_C368-T01_good_17.850
SRR6049664Rhizomagastrodiae_C368-T10_good_18.050
SRR6049665Rhizomagastrodiae_C368-T10_good_18.050
SRP279888GastroGastrodia elata tuber 3.47
JuvenJuvenile tuber3.70
Mother_GastroMother tuber of Gastrodia elata 0.66
Mother_JuvenMother tuber of Juvenile 1.49