Detail information of GWHGAAEX010060/evm.TU.scaffold_269.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|719980605|ref|XP_010249855.1|1.19E-51PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Nelumbo nucifera]
Swissprottr|Q6ID77|MED11_ARATH1.00E-45Mediator of RNA polymerase II transcription subunit 11
trEMBLtr|I1NY19|I1NY19_ORYGL3.00E-52Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA02G0062500.1}

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000026883022101400-
Transcript Sequence

Network for GWHGAAEX010060

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10280.8Med119913.70E-09
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0003712Molecular Functiontranscription cofactor activity
GO:0016592Cellular Componentmediator complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.950
SRR2545915Juvenile tuber14.300
SRP108465SRR5643513five period of Gastrodia elata27.350
SRR5643514five period of Gastrodia elata31.750
SRR5643515five period of Gastrodia elata36.070
SRR5643524five period of Gastrodia elata37.280
SRR5643525five period of Gastrodia elata25.790
SRR5643528five period of Gastrodia elata32.360
SRR5643658five period of Gastrodia elata27.340
SRR5643659five period of Gastrodia elata28.910
SRR5643660five period of Gastrodia elata24.860
SRR5643661five period of Gastrodia elata27.650
SRR5643662five period of Gastrodia elata22.630
SRR5643663five period of Gastrodia elata19.870
SRR5643664five period of Gastrodia elata15.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.040
SRR6049655Rhizomagastrodiae_C368-T10_good_124.360
SRR6049656Rhizomagastrodiae_C368-T07_good_124.810
SRR6049657Rhizomagastrodiae_C368-T07_good_119.590
SRR6049658Rhizomagastrodiae_C368-T04_good_124.120
SRR6049659Rhizomagastrodiae_C368-T04_good_115.780
SRR6049660Rhizomagastrodiae_C368-T01_good_121.580
SRR6049661Rhizomagastrodiae_C368-T04_good_115.790
SRR6049662Rhizomagastrodiae_C368-T01_good_127.550
SRR6049663Rhizomagastrodiae_C368-T01_good_120.200
SRR6049664Rhizomagastrodiae_C368-T10_good_135.590
SRR6049665Rhizomagastrodiae_C368-T10_good_135.590
SRP279888GastroGastrodia elata tuber 25.71
JuvenJuvenile tuber31.57
Mother_GastroMother tuber of Gastrodia elata 53.49
Mother_JuvenMother tuber of Juvenile 43.50