Detail information of GWHGAAEX010073/evm.TU.scaffold_27.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|720085030|ref|XP_010243394.1|4.02E-18PREDICTED: zinc finger protein 8-like [Nelumbo nucifera]
Swissprottr|Q84WI0|GIS_ARATH2.00E-15Zinc finger protein GIS
trEMBLtr|M0TSS7|M0TSS7_MUSAM1.00E-18Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P22740_001}
TAIRAT3G580707.00E-15C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000023606610607550+
Transcript Sequence

Network for GWHGAAEX010073

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.300
SRR2545915Juvenile tuber54.540
SRP108465SRR5643513five period of Gastrodia elata45.900
SRR5643514five period of Gastrodia elata3.360
SRR5643515five period of Gastrodia elata20.420
SRR5643524five period of Gastrodia elata6.430
SRR5643525five period of Gastrodia elata0.480
SRR5643528five period of Gastrodia elata0.200
SRR5643658five period of Gastrodia elata0.000
SRR5643659five period of Gastrodia elata42.480
SRR5643660five period of Gastrodia elata89.630
SRR5643661five period of Gastrodia elata95.050
SRR5643662five period of Gastrodia elata80.110
SRR5643663five period of Gastrodia elata61.320
SRR5643664five period of Gastrodia elata16.110
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.080
SRR6049655Rhizomagastrodiae_C368-T10_good_14.620
SRR6049656Rhizomagastrodiae_C368-T07_good_15.150
SRR6049657Rhizomagastrodiae_C368-T07_good_14.160
SRR6049658Rhizomagastrodiae_C368-T04_good_13.970
SRR6049659Rhizomagastrodiae_C368-T04_good_12.290
SRR6049660Rhizomagastrodiae_C368-T01_good_11.030
SRR6049661Rhizomagastrodiae_C368-T04_good_16.160
SRR6049662Rhizomagastrodiae_C368-T01_good_13.530
SRR6049663Rhizomagastrodiae_C368-T01_good_11.000
SRR6049664Rhizomagastrodiae_C368-T10_good_11.890
SRR6049665Rhizomagastrodiae_C368-T10_good_11.890
SRP279888GastroGastrodia elata tuber 6.76
JuvenJuvenile tuber16.85
Mother_GastroMother tuber of Gastrodia elata 0.54
Mother_JuvenMother tuber of Juvenile 5.96