Gene detail

Detail information of GWHGAAEX010074/evm.TU.scaffold_27.19

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|379729731\|ref\|YP_005321927.1\|	2.00E-13	peptidase c14 caspase catalytic subunit p20 [Saprospira grandis str. Lewin]
KOG	KOG1164	0	Casein kinase (serine/threonine/tyrosine protein kinase)
nr	gi\|672110914\|ref\|XP_008797939.1\|	0	PREDICTED: uncharacterized protein LOC103712966 isoform X4 [Phoenix dactylifera]
Swissprot	tr\|P42158\|KC1D_ARATH	5.00E-56	Casein kinase I isoform delta-like
trEMBL	tr\|M0T646\|M0T646_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P11480_001}
TAIR	AT3G13670	0	Protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000023	1071882	1083007	+

Transcript Sequence
>GWHTAAEX010074 TTATATAAAAAGTGAAATAATCGCATCCACCCGCAATTCCATACTCTTCCTCGGAGCCCCTCCTGCTTCTTCCCTTAGCCGCCTTATCTAAAAGCCGGCGAGAGCTCAGCCCCAAATCGTCACTGATCGATTTGAAGCACCAAACGGGAAGAAGAAGACGGGAAAAATTTGTAAGCGAGACCCTCAGCTGTGCCGATTCGTGTTTAGACTGATCCATCCTAGTCTCCGCGTCTCTTTTTACGAGATCTATGGCGGAAGATATTGGGAGAGATTGAGGAGATAATGGTTGGTTTTGGAGCGGTGCGCCGTGGTTGCATGGGTGAAGAATGCCAGAACTTCGGAGCGGGGTGCGTCGTGGAGGTCGTGCTTCACCGCCTCTGGCTGTAGATCGTGAGACTAGGAGGCCAAGGACTCGTGCGACGGCTAGGAAAGCTTCGGAAGGGGCTAGATCACCGAGGAAACTTGTACCGGCTGAGAAGGCGAAGCCTGCGGGAAAGGGGAGGCCGAGGGGCAGGCCATCAAAGAAAGCAGCAGTTATTACTAGGCTGATTGTGACGGAGGACGAGGGAGAGGGAGAGGGAAAGGTATCCGATCAGGTTAAGGAGGCTGCACTTGGTAAGGAGGCGGAGAAGCTGGGAGGAATTGAAGCTGTGGATTGCCAAAATTTGGAACTTCTGCACGAGGTTCAGGGCAAGATGATGGGTGATGATAGTGGTGGGTTGAGCGCCAACAAGGTTGCGGGACAAGAAGAGGAAGGGAACACAGCTCCTTTTCCTGAAAAGGTTCAAGTAGGTGGATCTCCTGTTTATAAGATTGATAGGAGGTTGGGTAAAGGCGGCTTTGGCCAAGTTTTTCTTGGTCGTCGTGTTAGTGGTGGTAATGAACGCACAGTGGGTCCTGGGGCTCTTGAGGTTGCTCTCAAATTTGAGCATAGAAATAGCAAGGGTTGTACATATGGGCCTCCTTATGAGTGGCAGGTTTACAGTGCTCTTGGTGGAAGTCACGGGGTTCCTAGAGTACACTATAAAGGAAGGCAGGGTGACTATTATGTTATGGTGATGGATATGCTGGGTCCGAGTTTATGGGATGCATGGAATTCTGCTGGTCAGGCGATGTCGTCTGAAATGGTTGCATGCATTGCTGTTGAATCTATATCTATACTTGAGAAGGTGCATGCTAAAGGTTATGTTCATGGGGATGTAAAGCCTGAGAATTTTTTGCTTGGTCAGCCATCAACACCTCAAGAAAAGAGATTATTTCTTGTTGATCTTGGGCTGGCCACAAAATGGAAAGATTCTGCAACTTGCCAGCATGTGGAATACGATCAACGCCCAGATGTCTTCAGGGGAACTGTTCGATATGCAAGTGTCCATGCACACTTGGGAAGAACTGCTAGTAGAAGAGATGATCTAGAATCTCTTGCATACACTCTTATTTTTCTTCACAGAGGCAGGTTACCTTGGCAGGGATACCAGGGGGAGAATAAGTCATTTTTGGTTTGCAAGAAAAAGATGGCAACATCTCCGGAGTTACTTTGTTGTTTCTGCCCACCTCCTTTTAAGCAATTTCTTGAAACTGTGGTAAATTTAAAGTATGATGAGGAGCCCAACTATTCTAAACTTATATCTATGTTTGACGAGTTAATTGGACCTAATCCTGCCGTAAGACCAATCAATACAGATGGAGCACTGAAGGTTGGACAGAAAAGAGGCAGATTAACTATAGATGACGAAGATGATGCTCAATTAAGAAAGAAAATTCGATTGGGTGTTCCAGCCACTCAGTGGATTTCAGTCTACAATGCAAGGCCGCCTATGAAGCAGAGGTATCACTATAATGTCGCTGATTCACGGCTGGCACAGCATGTTGAGAGAGGAAACCTTGATGGACTTCTTATTAGCTGTGTTGCATCTTGCACGAATCTATGGGCTCTCATCATGGATGCTGGAACTGGTTTTACATCTCAAGTTTATGAACTTGCCCCATGCTTTCTTCACAAGGAATGGATCATGGAGCAATGGGAAAAGAACTACTATATTAGCTCCGTAGCTGGTGCAAATAATGGAAGTTCTATTGTGGTGATGTCCAAAGGCACACAGTACACGCAGCAGTCCTATAAAGTCAGCGAATTTTTCCCCTTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTTCACGTCACATCGATGGCAACGGCAGGCACCCGATGGGGCGTCGTAATGTCGAGAAATGCCGGCTTCAGTGATCAGGTGGTCGAGCTAGACTTCTTGTATCCCAGTGAGGGCATCCATAGGCGCTGGGACAGCGGCTACCGCATCACATCCATGGCAGCCACGTCAGATCAGGCGGCTCTCATCCTGAGCGTTCCTAAACGCAAGCTTGGCGATGAGACGCAGGAGACCCTCAGGACATCAGCTTTCCCAAGCGCCCATGTCAAGGACAAATGGGCGAAGAATCTCTACCTGGCTTCTGTGTGCTATGGCCGCACGGTGTCATGATGACTCAAAAACAGAAAGAAGAAACATGTTTTCACTCACTCTCATCAGCTAGGCTTTCTTTCTCCAGATTTGTATATCTTTTATATCCATCTCTATTATACGTATAAAAAAGATTAACAACATCGAGGGCCTCTCTGGACCCACTGCCCGGATTGTCTCTGTATATTTATTTATCCTTTTTAAAATTTTTATTCGTAATGATTGGTATTTATGATAATGCATCTTTTATGAGTGTGGTATTCAGAGGGGGCAAACCCCACATGAATCATGAGAAACAACACTATATTTAACTGCATTATATCAAATCTAGTTCAGAAGTAGACTCTTTCAAACTTCTCATTCATTAAACATCCTCATTGTTATTTTTATGTAATTAATAGTTTCTCTAAACTACTCTTAAATATTAACA

Network for GWHGAAEX010074

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	161	397	4.30E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	78.950
SRP064423	SRR2545915	Juvenile tuber	82.740
SRP108465	SRR5643513	five period of Gastrodia elata	129.510
	SRR5643514	five period of Gastrodia elata	117.340
	SRR5643515	five period of Gastrodia elata	114.760
	SRR5643524	five period of Gastrodia elata	126.000
	SRR5643525	five period of Gastrodia elata	120.830
	SRR5643528	five period of Gastrodia elata	108.970
	SRR5643658	five period of Gastrodia elata	129.600
	SRR5643659	five period of Gastrodia elata	111.880
	SRR5643660	five period of Gastrodia elata	108.820
	SRR5643661	five period of Gastrodia elata	114.570
	SRR5643662	five period of Gastrodia elata	112.520
	SRR5643663	five period of Gastrodia elata	100.040
	SRR5643664	five period of Gastrodia elata	108.020
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	118.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	106.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	110.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	141.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	128.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	148.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	139.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	122.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	109.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	118.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	112.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	112.530
SRP279888	Gastro	Gastrodia elata tuber	115.65
	Juven	Juvenile tuber	229.87
	Mother_Gastro	Mother tuber of Gastrodia elata	157.83
	Mother_Juven	Mother tuber of Juvenile	228.94