Gene detail

Detail information of GWHGAAEX010076/evm.TU.scaffold_27.24

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0212	Uncharacterized conserved protein
nr	gi\|672107743\|ref\|XP_008781327.1\|	PREDICTED: protein VAC14 homolog [Phoenix dactylifera]
Swissprot	tr\|Q9ZU97\|VAC14_ARATH	Protein VAC14 homolog
trEMBL	tr\|M5Y3P4\|M5Y3P4_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26405.1}
TAIR	AT2G01690	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000023	1573666	1617482	+

Transcript Sequence
>GWHTAAEX010076 ACCGCGAGTGATTTTACCGCAGATGAGCCTATCCCATCCTAATTTTACTAGATCAAGCACCGTGACCACCGCGTTCGCTCTAAACTGTAAGCGCGAACTCCGTCGCGAGAGCCCACCAATGCGGAGCGGAAATGTTCTCCGACTTTATCACTCCGCAAATCCTCTCCTCCACTTCTATCAGCCAGAGTATGGGATTCAGTGTCCCATTTTTTGATAGATTTTAGCGTTTTTATACCGAATTCCCACCCTATCGCGGATCTACTCTCGCTCTCACATTCACCTTTTCCGGCCTTTCTCCACAATTGATCTGATGAATTTCAGGTTGAGTGGAAGATAGACAGCGAGTGCCATTCCTAGCCAGTACTGTACTGACGATTCTCTTTGGTTAATTTCTCCCTCGGCTGTGGAATGGCCGACGCGCTATCTATAATTCCGTCGTCTGTTCTCAGGAACCTCGCCGATAAACTCTATGAAAAGCGAAAGAATGCGGCCCTAGAGATCGAAGGTATCGTGAAACAATTAGCGCAGGCTGTAGAACATGACAAGATAACTGCTGTGATTAATCTGTTGGTTAATGAGTATACTTACTCTTCGCAGTCGAATCATAGGAAGGGAGGGTTAATAGGGCTTGCTGCAGCTACAGTAGGATTGAGTACAGAAGCTGTTCAGCATCTTGAGCAAATTGTACCACCCGTGCTCAACTCTTTTCTTGATCAAGATAGCAGAGTGCGATATTATGCATGTGAGGCACTATACAACATTGCAAAAGTTGTTAGGGGAGATTTCATTATTTATTTCAACCAGATTTTTGATGCCCTTTGTAAGCTTTCAGCAGACTCGGACCCTAATGTGCAGAGTGCTACGCATCTGCTAGACCGACTTGTAAAAGATATTGTTACCGAGAGCGATCAATTCAGCATAGAAGAATTCATTCCTTTGTTGCGAGAACGGATGCATGTATTAAGCCCCTATGTGCGACAATTTCTGGTAGGATGGATCACTGTACTAGATAGTGTTCCAGATATTGATATGCTTGGTTTCCTTCCAGATTTTCTTGATGGCCTATTCAACATGCTAAGTGATTCTAGCCATGAAATACGTCAGCAAGCTGATTCTGCCCTTTCGGAATTTCTGCAAGAAATAAAGAACTCTCCAAATGTAGATTATGGTCGCATGGCCGAAATATTAGTTCAAAGGGCTGGTTCCTCAGACGAGTTTACTAGGTTAACGGCTATTACTTGGATAAATGAGTTTCTGAAACTTGGTGGAGACCAGCTTGTTCCGCACTATTCAGATATTCTTGGAGCCATATTACCTTGCATATCAGACAAAGAAGATAAGATAAGAGTGGTTGCTCGTGAAACAAATGATGAGCTTCGTGCTATTCATGCTGATCCAGCAGAGGGATTTGATATAGCCTCAATTCTTTCGATTGCAAGGAGACAATTAACAAGCGAATGGGAAGGCACAAGGTTGGAAGCTCTTCATTGGATTGCAGCACTATTAACTCGACATCGATCTGAGGTTTTTGCGTACTTGAATGACATATTTGACTCCCTTTTGAAAGCGCTATCTGATCCTTCAGATGAGGTTGTTCTTCTTGTGCTTGAAGTTCATGCATGCATAGCAAAAGATGTTCAGCACTTTCGTCATCTAGTTGTTTTTCTGCTTCGTAGCTTTCATTCTGACCACATGCTTCTTGAGAAACGTGGTGCTTTGATAGTGCGTCGACTTTGTGTTCTATTGGGTGCTGAAAGAGTTTACAGGGAATTTTCAACAATCCTAGAGGGTGAAGATGATTTGGAATTTGCATCAATCATGGTTCAGGCACTGAATTTGATTCTACTAACTTCATCTGAACTGGCTAATCTTAGAGAACTTCTCAAGCAATCATTGATTAATCCTTCAGGCAAAGATTTATTTCTCTATCTATATTCTTCTTGGTGCCATTCACCGATGGCAATATTGAGCTTGTGTCTGCTTGCTCAGGCCTATCATCACGCAAGTGATATAATTAAGTCACTGGGGGAGGAAGACATAAATGTGAGGTTCTTGATGCAGTTAGACAAGTTGATACGGTTACTTGAGACACCAGTATTTGCTTACTTGAGATTGCAGCTTTTGTATCCTGACAAGTATCCATGGTTGATCATTGTGCTATATGGTCTTTTGTTGTTGCTACCTCAGCAAAGTTCGGCATTCAAGATGCTGAAGACAAGATTGAAACCCCTGCGTCCTCATGATGTAATGGCTGACCAAGCCGTATGGCCATCAGCGGCGGGGGACAACCATGATGATCCAGGGGGCATCAACTTCACATCCAGGCTGCAGCAGTTTCATAACATGCGGATCCTGCATAGAAACCATACCAGATCCCATCAGTTCACCTGTAATTCTTTGCAGCCTTCATTGCTGCTTCCTCTGGAGATACGTATATCAGGCGATCTGCAGCGCTCTGTTCCAGCTTCTGAAAGCGGTGGCAGCAGCAGCCACCCTCCGTCCAGATCGTGATGGCTCCGCTTATTCCACAGCGATGTGATGATTCGTCGGTAGCTGTAGGCACTTGTCGTATGCTACATAACTATAATTTGGTTTATTTCATTGGTTGTTCTCCGCCGTGTTTATTTAAGGTGGGGGGGTGGTATTTTTGTGGATATAGGCACACGCATTAGGATCTGTTTGTTCATAACTGAGCGGAATATTATGTGTTTCGGTGCTCATATGGCAGCCTTCTCTGCGCTGCTCTTGCTGCTTAGTGAAGCCTTTTGCGAGGGGGGAGGAAAAAAGGTTTTAAGAGTTTTTTTTCTTTTAGTTCTTCAAATTTTTTTTGCGTTAAATTTCTCTCCTGTTTTCCTTATGGTCGGTCACCCGGCAGACAGTGACTATATATACAGATGAATCAGGTAAAATATTATGTACATTGCAGGTATTTTTTTTTAATTGTTTTATGCGAAGCTATGGCACCAATGAATGATACTTTTTCCTAATGCAAAGTTTGCTGTGATTGACGAAAATATGATGATGATGATGATGCTGC

Network for GWHGAAEX010076

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12755.6	Vac14_Fab1_bd	65	161	2.60E-40
PF11916.7	Vac14_Fig4_bd	429	606	4.80E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.040
SRP064423	SRR2545915	Juvenile tuber	21.650
SRP108465	SRR5643513	five period of Gastrodia elata	17.710
	SRR5643514	five period of Gastrodia elata	15.050
	SRR5643515	five period of Gastrodia elata	16.100
	SRR5643524	five period of Gastrodia elata	15.420
	SRR5643525	five period of Gastrodia elata	14.590
	SRR5643528	five period of Gastrodia elata	11.560
	SRR5643658	five period of Gastrodia elata	15.110
	SRR5643659	five period of Gastrodia elata	14.660
	SRR5643660	five period of Gastrodia elata	11.920
	SRR5643661	five period of Gastrodia elata	13.650
	SRR5643662	five period of Gastrodia elata	14.970
	SRR5643663	five period of Gastrodia elata	15.410
	SRR5643664	five period of Gastrodia elata	12.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.020
SRP279888	Gastro	Gastrodia elata tuber	16.10
	Juven	Juvenile tuber	18.07
	Mother_Gastro	Mother tuber of Gastrodia elata	19.95
	Mother_Juven	Mother tuber of Juvenile	25.26