Detail information of GWHGAAEX010077/evm.TU.scaffold_27.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336172688|ref|YP_004579826.1| | 1.00E-21 | hypothetical protein [Lacinutrix sp. 5H-3-7-4] |
| nr | gi|743771831|ref|XP_010916205.1| | 0 | PREDICTED: probable inactive receptor kinase At1g48480 [Elaeis guineensis] |
| Swissprot | tr|Q9LP77|Y1848_ARATH | 0 | Probable inactive receptor kinase At1g48480 (Precursor) |
| trEMBL | tr|B9T5A8|B9T5A8_RICCO | 0 | ATP binding protein, putative {ECO:0000313|EMBL:EEF28958.1} |
| TAIR | AT1G48480 | 0 | receptor-like kinase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000023 | 1720212 | 1724314 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010077
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 48 | 81 | 4.00E-08 |
| PF00560.32 | LRR_1 | 158 | 180 | 0.9 |
| PF00069.24 | Pkinase | 377 | 637 | 1.20E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.260 |
| SRR2545915 | Juvenile tuber | 18.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 46.970 |
| SRR5643514 | five period of Gastrodia elata | 41.640 | |
| SRR5643515 | five period of Gastrodia elata | 44.520 | |
| SRR5643524 | five period of Gastrodia elata | 37.620 | |
| SRR5643525 | five period of Gastrodia elata | 107.010 | |
| SRR5643528 | five period of Gastrodia elata | 50.670 | |
| SRR5643658 | five period of Gastrodia elata | 127.330 | |
| SRR5643659 | five period of Gastrodia elata | 36.920 | |
| SRR5643660 | five period of Gastrodia elata | 30.690 | |
| SRR5643661 | five period of Gastrodia elata | 35.930 | |
| SRR5643662 | five period of Gastrodia elata | 31.870 | |
| SRR5643663 | five period of Gastrodia elata | 30.220 | |
| SRR5643664 | five period of Gastrodia elata | 39.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 64.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 49.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 76.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 60.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 53.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 47.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 66.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 63.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 67.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 63.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 73.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 73.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.47 |
| Juven | Juvenile tuber | 28.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 50.93 | |
| Mother_Juven | Mother tuber of Juvenile | 35.30 |