Detail information of GWHGAAEX010080/evm.TU.scaffold_27.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 5.00E-76 | MADS box transcription factor |
| nr | gi|672161840|ref|XP_008800745.1| | 1.08E-96 | PREDICTED: MADS-box transcription factor 23-like [Phoenix dactylifera] |
| Swissprot | tr|Q6EP49|MAD27_ORYSJ | 7.00E-91 | MADS-box transcription factor 27 |
| trEMBL | tr|F2E3K9|F2E3K9_HORVD | 4.00E-95 | Predicted protein {ECO:0000313|EMBL:BAK01931.1} |
| TAIR | AT4G37940 | 5.00E-76 | AGAMOUS-like 21 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000023 | 2184702 | 2225470 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010080
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 4.50E-24 |
| PF01486.16 | K-box | 85 | 170 | 1.10E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.600 |
| SRR2545915 | Juvenile tuber | 7.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.580 |
| SRR5643514 | five period of Gastrodia elata | 79.790 | |
| SRR5643515 | five period of Gastrodia elata | 55.220 | |
| SRR5643524 | five period of Gastrodia elata | 83.680 | |
| SRR5643525 | five period of Gastrodia elata | 2.780 | |
| SRR5643528 | five period of Gastrodia elata | 4.600 | |
| SRR5643658 | five period of Gastrodia elata | 3.380 | |
| SRR5643659 | five period of Gastrodia elata | 4.000 | |
| SRR5643660 | five period of Gastrodia elata | 3.870 | |
| SRR5643661 | five period of Gastrodia elata | 5.810 | |
| SRR5643662 | five period of Gastrodia elata | 4.200 | |
| SRR5643663 | five period of Gastrodia elata | 4.850 | |
| SRR5643664 | five period of Gastrodia elata | 5.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 57.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 50.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 62.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.870 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 61.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 72.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.71 |
| Juven | Juvenile tuber | 23.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.38 | |
| Mother_Juven | Mother tuber of Juvenile | 80.57 |