Gene detail

Detail information of GWHGAAEX010090/evm.TU.scaffold_27.48

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|433653951\|ref\|YP_007297659.1\|	3.00E-85	DNA/RNA helicase, superfamily II, SNF2 family [Thermoanaerobacterium thermosaccharolyticum M0795]
KOG	KOG0386	0	Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily)
nr	gi\|743856042\|ref\|XP_010941745.1\|	0	PREDICTED: probable ATP-dependent DNA helicase CHR12 [Elaeis guineensis]
Swissprot	tr\|F4J9M5\|CHR12_ARATH	0	Probable ATP-dependent DNA helicase CHR12
trEMBL	tr\|F6HDM6\|F6HDM6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50397.1}
TAIR	AT3G06010	0	Homeotic gene regulator

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000023	2581290	2623878	+

Transcript Sequence
>GWHTAAEX010090 GGCTGGTCGATGAAGTGGGAGGGGCTTTCGCGAGCAGTCGGGCGCTTTGTTTAGAGCCCAAAAAACCCTTGAATTTCCCGGGAAGGGAACGAAAAAGAAGAGACCGTTGTTCCTTTTAAGCGCGGCCATAAATAAATTCGGAATTGGTTCATGGCTGCTCCGGCAGACATCATTACCTCTGTAGAACTCGCGGAGAAGACGAAGACGCTGATCGGTGCACTCAATCTCATCTCTCGCAACCTCCCTCTCCCCCCCGATGTTTTTCACGCTATTTCTTCTATTTACGACAATGGTGTTGCCGCCGACAGTGTTACCCCAGATGGAGGGCCATCTGCGGCTGAGGAACTTGATGCTCATAACGCCTATATCCAGGAGGATCCGCTTTGTAGTGTCCCAAATGGAGGTGATTTATTTATGGAGTTTGAAGATGCATTAGAGGTGCTTCAAGATAATCACTTGTCTAGTACAACACTAAGCCAAACAAAGGAGAGCCGCCTACAAAGTTTAATTCAACATCGTCTTACAGAGCTTGAAGGGTTACCATCAAATATGGGGGAAGATTTGCAGATGAAATGCTTGCTTGAACTCTATTGTCTTAAGTTGGTAGAATTAAAGAGGAAGGTACGTGCTGATGTTAGTGCAGAGCACTGGCTATATGAAAAATGCGCACATCCTGAAAAACAGTTGTTTGACTGGGGAATGATGCACATCCGATATCCATTTAGTATGTATGGCATTGGAGATACTTATACAATGGAAGTTGATGATCGTCAGAGAAAAAAAAGAGATGCAGAGAGACTTTCTAGACTTGAAGAGGAGGAAAAGAATCGCTTGGAGACCAAAAAGAGAAAATTTTTTACCGAAATACTTAATGCTGCTCGCGAATTTCAATTGCAAATACAAGCTGCTTTGAAACGAAGAAAACAGAAGAATGATGGCATTCAGGCATGGCATGCAAGACAAAGGCAACGAGCTACTCGTGCAGAAAAGTTGAGATTTCAAGCATTGAAAGCCGATGATCAAGAGGCATACATGAAATTGGTTGAAGAGAGCAAGAATGAGCGGTTAACCATGCTTCTTGGAAAAACAAATGAGCTTCTTTTTGGCCTAGGTGCTGCTGTCCAGAGACAGAAAGATTCTGAACATTTTGATGATCTCGATACTCTTAAAAATTTGGAACCTGTTGATTCTTCTCTCTCTAAAACTGGAACCCCAGGAGAACTATCTTTAGATGATGAGAAGGATATTGTTGATGATGCGTCTGGTACAGATTTCAAGACAAATGATTTTCTTGAAGGACAAAGACAGTATAATTCTGCTGTTCATTCAATTCAGGAAAAGGTAACCGAACAGCCAGCGATGCTTCAGGGTGGAGAACTAAGATCTTATCAGTTAGAAGGACTCCAATGGATGCTTTCTTTGTTTAACAATAATCTAAATGGTATTCTCGCTGATGAAATGGGTCTAGGCAAGACAATTCAGACAATTGCACTCATTGCATATCTTATGGAAAACAAATCTGTCAGCGGTCCCCACCTGATCATAGCTCCAAAAGCTGTATTGCCAAATTGGCTTAATGAATTTTCAACTTGGGCGCCTAGTATTTCAACTGTCTTATATGATGGAGGGGTAAATGAACGAAAGGCAATGAAAGAAGAGATTTCTGGTGAAGGAAAGTTTAATGTTTTGATCACCCATTATGATCTTATAATGAAAGATAAAGCATTTCTCAGGAAGATTCACTGGTCCTATATGATAGTTGATGAAGGACATCGCTTAAAAAATCATGAGTGTGCTCTTGCACGAACGCTAGCCTCTGGCTTTCATATTAGGCGTAGACTTCTTTTAACAGGGACTCCAATACAGAATAGTCTTCAAGAACTGTGGTCATTGCTAAATTTTTTACTACCCAGCATTTTTAATTCAGTACAGAATTTTGAGGAATGGTTTAATGCTCCATTCTCAGATAAATGTGAGGTTAGTCTTACAGATGAGGAGCAGCTTTTGATTATTCGACGCTTACATCAAGTTATAAGGCCGTTTTTACTAAGAAGAAAGAAGGATGAGGTTGAAAAGTATCTTCCTGGGAAAACCCAAGTGATATTAAAATGTGATATGTCTGCATGGCAGAAAGCTTACTACCAGCAAATTACAGATATTGGAAGGGTTGGGCTAGAATCTGGGACGGGAAGGTCGAAGGGGCTGCAGAACTACTCGATGCAGCTGCGGAAGTGCTGCAACCACCCATTTCTGTTCGTGGAGGAGTACGGGCTGTGGGCTCGGGAGCAGATCGTGCGGGCGTCGGGCAAGTTTGAGCTGCTGGACCGGCTGCTCCCTAAGCTGAAGCGAGCGGGGCACAGGGTGCTGCTGTTCTCCCAGATGACCCGCCTGATTAACATCCTGGAGATGTATCTGGACGGCCACGGCTACAAGCATCTGCGCCTTGACGGCTCCACCAAGACGGAGGAGCGCGGCACCAAGCTGCGGCTGTTCAACGCCCCCGACTCCGAGTTCTTCATGTTCCTTCTGAGCACCCGGGCGGGCGGCCTCGGCCTCAACCTCCAGACCGCCGACACCGTCATCATCTTCGACAGCGACTGGAACCCTCAGATGGATCAGCAGGCCGAGGACCGCGCCCACCGCATCGGCCAGAAGAAGGAGGTCCGCGTCTTCGTCCTCGTCAGCGTCGGCTCCATCGAGGAGGTCATCCTCGACCGCGCCAAGCAGAAGATGGGCATCGACGCTAAGGTTATCCAGGCCGGCCTCTTCAACACTACCTCCACAGCTCAGGACAGGCGGGAGATGCTCGAGGAGATCATGCGGAGGGGAACCGATTCACTCGGGGCGGATGTTCCCAGCGAGAGGGAGATAAACCGGCTCGCCGCCCGGAACGAGGAGGAGTTCTGGCTGTTCGAGAGGATGGATGAGGAGAGGAGGCAAAGGGAGAGGTACAAATCGAGGCTGATGGAGGAGTTCGAGGTCCCCGATTGGGTCTATTTCAAGAACATCGAAGCTGGCAGCAAGACCAAGGACGCCGTTCTGGCCTCTTCCGGCAAGAGACGGCGCCGGGAGGTGGTTTACGCCGATCCCCTCACCGACATCCAGTGGATGAAAGCCGTCGAAAACGGGGAGGACGTGTCGGCGTTCTCCGCCAGGGGGAGGAGAAGGGAGCAGCTCTCGGATGCAGTGTACGAGTCGGCGACCACCTCGGATGAAATTGTGCTGCGGAACGCGAGCAAGCCGGCGGCGAGTGATGATGCCAGCGACGAGAATGATGGAGACGGCGAAGGCGGCGGCTGGTACGGCAGCATCGCCACTTGGACCGCCCATAAGAGGAAGCGCTCAAGCCACGCCTCGTTTTCGGAAGCGAAGGCTTCTCAGGGTTTTTGATTCCCGTCACAAATACATGACGATAGCTTGCTTGCTTGCTTTCCTGCAACTACTGCTTGTGGATGCTTTTGGGATTGTAGGAAAATACGGCATATGATCGATTCGATTCTGGATTGCATGAGTTAGGTGTGATTATTAGATGAAAGCCAAGAAATGATTAAAAAAAGAACTTGTATATAATAAGGAGAATTTCATTGCATACGGCCCACATTCTTCTTCGGATGATACTTTTTATTTAATATTAAATGATAAAACTATAACTAATTTAGAAATTTAAATGTTATAAATTATAAAAG

Network for GWHGAAEX010090

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	426	701	2.50E-69
PF00271.30	Helicase_C	720	833	1.40E-18
PF14619.5	SnAC	922	987	8.70E-10

Protein Sequence

>GWHPAAEX010090
MAAPADIITSVELAEKTKTLIGALNLISRNLPLPPDVFHAISSIYDNGVAADSVTPDGGPSAAEELDAHNAYIQEDPLCSVPNGGDLFMEFEDALEVLQDNHLSSTTLSQTKESRLQSLIQHRLTELEGLPSNMGEDLQMKCLLELYCLKLVELKRKVRADVSAEHWLYEKCAHPEKQLFDWGMMHIRYPFSMYGIGDTYTMEVDDRQRKKRDAERLSRLEEEEKNRLETKKRKFFTEILNAAREFQLQIQAALKRRKQKNDGIQAWHARQRQRATRAEKLRFQALKADDQEAYMKLVEESKNERLTMLLGKTNELLFGLGAAVQRQKDSEHFDDLDTLKNLEPVDSSLSKTGTPGELSLDDEKDIVDDASGTDFKTNDFLEGQRQYNSAVHSIQEKVTEQPAMLQGGELRSYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLMENKSVSGPHLIIAPKAVLPNWLNEFSTWAPSISTVLYDGGVNERKAMKEEISGEGKFNVLITHYDLIMKDKAFLRKIHWSYMIVDEGHRLKNHECALARTLASGFHIRRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEEWFNAPFSDKCEVSLTDEEQLLIIRRLHQVIRPFLLRRKKDEVEKYLPGKTQVILKCDMSAWQKAYYQQITDIGRVGLESGTGRSKGLQNYSMQLRKCCNHPFLFVEEYGLWAREQIVRASGKFELLDRLLPKLKRAGHRVLLFSQMTRLINILEMYLDGHGYKHLRLDGSTKTEERGTKLRLFNAPDSEFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILDRAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTDSLGADVPSEREINRLAARNEEEFWLFERMDEERRQRERYKSRLMEEFEVPDWVYFKNIEAGSKTKDAVLASSGKRRRREVVYADPLTDIQWMKAVENGEDVSAFSARGRRREQLSDAVYESATTSDEIVLRNASKPAASDDASDENDGDGEGGGWYGSIATWTAHKRKRSSHASFSEAKASQGF

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
K11647	SMARCA2_4	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0042393	Molecular Function	histone binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.620
SRP064423	SRR2545915	Juvenile tuber	34.430
SRP108465	SRR5643513	five period of Gastrodia elata	32.690
	SRR5643514	five period of Gastrodia elata	28.200
	SRR5643515	five period of Gastrodia elata	29.410
	SRR5643524	five period of Gastrodia elata	26.490
	SRR5643525	five period of Gastrodia elata	37.190
	SRR5643528	five period of Gastrodia elata	31.080
	SRR5643658	five period of Gastrodia elata	35.920
	SRR5643659	five period of Gastrodia elata	34.350
	SRR5643660	five period of Gastrodia elata	41.970
	SRR5643661	five period of Gastrodia elata	42.060
	SRR5643662	five period of Gastrodia elata	41.190
	SRR5643663	five period of Gastrodia elata	38.420
	SRR5643664	five period of Gastrodia elata	42.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.300
SRP279888	Gastro	Gastrodia elata tuber	37.20
	Juven	Juvenile tuber	52.87
	Mother_Gastro	Mother tuber of Gastrodia elata	34.47
	Mother_Juven	Mother tuber of Juvenile	37.97