Detail information of GWHGAAEX010091/evm.TU.scaffold_27.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|590700903|ref|XP_007046269.1|5.65E-52Ribosomal protein PSRP-3/Ycf65 [Theobroma cacao]
Swissprottr|P82412|RRP3_SPIOL1.00E-4730S ribosomal protein 3, chloroplastic (Precursor)
trEMBLtr|A0A061EAZ4|A0A061EAZ4_THECC2.00E-52Ribosomal protein PSRP-3/Ycf65 {ECO:0000313|EMBL:EOY02101.1}
TAIRAT1G685904.00E-46Ribosomal protein PSRP-3/Ycf65

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002326276162628143-
Transcript Sequence

Network for GWHGAAEX010091

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04839.12PSRP-3_Ycf651261721.70E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.270
SRR2545915Juvenile tuber9.520
SRP108465SRR5643513five period of Gastrodia elata16.730
SRR5643514five period of Gastrodia elata13.040
SRR5643515five period of Gastrodia elata13.420
SRR5643524five period of Gastrodia elata8.750
SRR5643525five period of Gastrodia elata8.450
SRR5643528five period of Gastrodia elata8.870
SRR5643658five period of Gastrodia elata12.870
SRR5643659five period of Gastrodia elata21.060
SRR5643660five period of Gastrodia elata18.770
SRR5643661five period of Gastrodia elata22.450
SRR5643662five period of Gastrodia elata26.960
SRR5643663five period of Gastrodia elata22.100
SRR5643664five period of Gastrodia elata23.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.020
SRR6049655Rhizomagastrodiae_C368-T10_good_15.910
SRR6049656Rhizomagastrodiae_C368-T07_good_18.850
SRR6049657Rhizomagastrodiae_C368-T07_good_110.090
SRR6049658Rhizomagastrodiae_C368-T04_good_114.910
SRR6049659Rhizomagastrodiae_C368-T04_good_112.630
SRR6049660Rhizomagastrodiae_C368-T01_good_113.730
SRR6049661Rhizomagastrodiae_C368-T04_good_112.570
SRR6049662Rhizomagastrodiae_C368-T01_good_111.970
SRR6049663Rhizomagastrodiae_C368-T01_good_19.480
SRR6049664Rhizomagastrodiae_C368-T10_good_113.110
SRR6049665Rhizomagastrodiae_C368-T10_good_113.110
SRP279888GastroGastrodia elata tuber 24.21
JuvenJuvenile tuber12.77
Mother_GastroMother tuber of Gastrodia elata 24.58
Mother_JuvenMother tuber of Juvenile 12.12