Detail information of GWHGAAEX010093/evm.TU.scaffold_27.52


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|330813691|ref|YP_004357930.1|9.00E-06ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit [Candidatus Pelagibacter sp. IMCC9063]
KOGKOG30522.00E-25Cytochrome c1
nrgi|568821919|ref|XP_006465389.1|1.01E-32PREDICTED: cytochrome c1-1, heme protein, mitochondrial-like [Citrus sinensis]
Swissprottr|P29610|CY12_SOLTU3.00E-33Cytochrome c1-2, heme protein, mitochondrial (Precursor; Fragment)
trEMBLtr|Q2VU88|Q2VU88_9ASPA4.00E-33Putative cytochrome c1 protein {ECO:0000313|EMBL:AAX20004.1} (Fragment)
TAIRAT5G408102.00E-25Cytochrome C1 family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002326976652719711-
Transcript Sequence

Network for GWHGAAEX010093

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02167.14Cytochrom_C133814.10E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00413CYC1, CYT1, petC Metabolic pathways map01100
Oxidative phosphorylationmap00190
Two-component systemmap02020
Cardiac muscle contractionmap04260
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0009055Molecular Functionelectron carrier activity
GO:0020037Molecular Functionheme binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.760
SRR2545915Juvenile tuber41.400
SRP108465SRR5643513five period of Gastrodia elata12.380
SRR5643514five period of Gastrodia elata24.870
SRR5643515five period of Gastrodia elata10.320
SRR5643524five period of Gastrodia elata14.210
SRR5643525five period of Gastrodia elata17.720
SRR5643528five period of Gastrodia elata16.700
SRR5643658five period of Gastrodia elata17.440
SRR5643659five period of Gastrodia elata10.310
SRR5643660five period of Gastrodia elata13.160
SRR5643661five period of Gastrodia elata9.820
SRR5643662five period of Gastrodia elata12.160
SRR5643663five period of Gastrodia elata15.860
SRR5643664five period of Gastrodia elata10.360
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_152.740
SRR6049655Rhizomagastrodiae_C368-T10_good_118.500
SRR6049656Rhizomagastrodiae_C368-T07_good_169.660
SRR6049657Rhizomagastrodiae_C368-T07_good_148.380
SRR6049658Rhizomagastrodiae_C368-T04_good_147.920
SRR6049659Rhizomagastrodiae_C368-T04_good_133.120
SRR6049660Rhizomagastrodiae_C368-T01_good_140.950
SRR6049661Rhizomagastrodiae_C368-T04_good_136.580
SRR6049662Rhizomagastrodiae_C368-T01_good_160.980
SRR6049663Rhizomagastrodiae_C368-T01_good_162.980
SRR6049664Rhizomagastrodiae_C368-T10_good_185.360
SRR6049665Rhizomagastrodiae_C368-T10_good_185.360
SRP279888GastroGastrodia elata tuber 17.90
JuvenJuvenile tuber37.47
Mother_GastroMother tuber of Gastrodia elata 26.45
Mother_JuvenMother tuber of Juvenile 33.48