Detail information of GWHGAAEX010094/evm.TU.scaffold_27.53
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|88657654|ref|YP_507337.1| | 3.00E-50 | ubiquinol-cytochrome c reductase, cytochrome c1 [Ehrlichia chaffeensis str. Arkansas] |
| KOG | KOG3052 | 8.00E-104 | Cytochrome c1 |
| nr | gi|374256005|gb|AEZ00864.1| | 6.77E-124 | putative cytochrome C1 protein, partial [Elaeis guineensis] |
| Swissprot | tr|P25076|CY11_SOLTU | 2.00E-109 | Cytochrome c1-1, heme protein, mitochondrial (Precursor) |
| trEMBL | tr|H6TNN5|H6TNN5_ELAGV | 3.00E-124 | Putative cytochrome C1 protein {ECO:0000313|EMBL:AEZ00864.1} (Fragment) |
| TAIR | AT5G40810 | 8.00E-104 | Cytochrome C1 family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000023 | 2720411 | 2722269 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010094
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02167.14 | Cytochrom_C1 | 80 | 209 | 1.20E-59 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00413 | CYC1, CYT1, petC | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 | ||
| Two-component system | map02020 | ||
| Cardiac muscle contraction | map04260 | ||
| Thermogenesis | map04714 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0020037 | Molecular Function | heme binding |
| GO:0009055 | Molecular Function | electron carrier activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 141.370 |
| SRR2545915 | Juvenile tuber | 151.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 105.330 |
| SRR5643514 | five period of Gastrodia elata | 153.430 | |
| SRR5643515 | five period of Gastrodia elata | 107.100 | |
| SRR5643524 | five period of Gastrodia elata | 130.200 | |
| SRR5643525 | five period of Gastrodia elata | 78.470 | |
| SRR5643528 | five period of Gastrodia elata | 96.150 | |
| SRR5643658 | five period of Gastrodia elata | 102.140 | |
| SRR5643659 | five period of Gastrodia elata | 89.750 | |
| SRR5643660 | five period of Gastrodia elata | 83.050 | |
| SRR5643661 | five period of Gastrodia elata | 85.790 | |
| SRR5643662 | five period of Gastrodia elata | 90.150 | |
| SRR5643663 | five period of Gastrodia elata | 95.220 | |
| SRR5643664 | five period of Gastrodia elata | 79.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 134.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 156.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 143.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 123.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 125.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 113.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 114.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 122.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 176.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 157.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 167.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 167.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 103.45 |
| Juven | Juvenile tuber | 133.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 68.25 | |
| Mother_Juven | Mother tuber of Juvenile | 87.63 |