Detail information of GWHGAAEX010099/evm.TU.scaffold_27.59


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530779864|ref|YP_008431664.1|2.00E-16hypothetical protein N186_01315 [Thermofilum sp. 1910b]
KOGKOG00871.00E-61GTPase Rab11/YPT3, small G protein superfamily
nrgi|743883156|ref|XP_010909337.1|6.16E-64PREDICTED: ras-related protein RABA5e-like [Elaeis guineensis]
Swissprottr|P28187|RAA5C_ARATH3.00E-62Ras-related protein RABA5c
trEMBLtr|A5C9K9|A5C9K9_VITVI6.00E-64Putative uncharacterized protein {ECO:0000313|EMBL:CAN66526.1}
TAIRAT2G431301.00E-61P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002329833012983720-
Transcript Sequence

Network for GWHGAAEX010099

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras121129.70E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding
GO:0003924Molecular FunctionGTPase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.940
SRR2545915Juvenile tuber11.860
SRP108465SRR5643513five period of Gastrodia elata21.270
SRR5643514five period of Gastrodia elata33.450
SRR5643515five period of Gastrodia elata60.160
SRR5643524five period of Gastrodia elata26.650
SRR5643525five period of Gastrodia elata54.520
SRR5643528five period of Gastrodia elata89.070
SRR5643658five period of Gastrodia elata32.170
SRR5643659five period of Gastrodia elata82.000
SRR5643660five period of Gastrodia elata49.830
SRR5643661five period of Gastrodia elata91.780
SRR5643662five period of Gastrodia elata66.880
SRR5643663five period of Gastrodia elata69.870
SRR5643664five period of Gastrodia elata92.930
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.770
SRR6049655Rhizomagastrodiae_C368-T10_good_166.740
SRR6049656Rhizomagastrodiae_C368-T07_good_138.410
SRR6049657Rhizomagastrodiae_C368-T07_good_136.660
SRR6049658Rhizomagastrodiae_C368-T04_good_125.360
SRR6049659Rhizomagastrodiae_C368-T04_good_124.580
SRR6049660Rhizomagastrodiae_C368-T01_good_131.770
SRR6049661Rhizomagastrodiae_C368-T04_good_127.280
SRR6049662Rhizomagastrodiae_C368-T01_good_133.000
SRR6049663Rhizomagastrodiae_C368-T01_good_131.470
SRR6049664Rhizomagastrodiae_C368-T10_good_139.960
SRR6049665Rhizomagastrodiae_C368-T10_good_139.960
SRP279888GastroGastrodia elata tuber 16.91
JuvenJuvenile tuber16.23
Mother_GastroMother tuber of Gastrodia elata 61.14
Mother_JuvenMother tuber of Juvenile 77.41