Detail information of GWHGAAEX010102/evm.TU.scaffold_27.62
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1041 | 0 | Translation initiation factor 2C (eIF-2C) and related proteins |
| nr | gi|743824649|ref|XP_010932833.1| | 0 | PREDICTED: protein argonaute 10 [Elaeis guineensis] |
| Swissprot | tr|Q9XGW1|AGO10_ARATH | 0 | Protein argonaute 10 |
| trEMBL | tr|A0A067KVV2|A0A067KVV2_JATCU | 0 | Protein argonaute {ECO:0000256|RuleBase:RU361178} |
| TAIR | AT5G43810 | 0 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000023 | 3086223 | 3115575 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010102
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16486.4 | ArgoN | 127 | 261 | 2.30E-31 |
| PF08699.9 | ArgoL1 | 271 | 321 | 1.10E-19 |
| PF02170.21 | PAZ | 341 | 452 | 1.20E-24 |
| PF16488.4 | ArgoL2 | 462 | 508 | 3.60E-15 |
| PF16487.4 | ArgoMid | 519 | 596 | 2.30E-11 |
| PF02171.16 | Piwi | 609 | 927 | 1.50E-112 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11593 | ELF2C, AGO | Axon regeneration | map04361 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.280 |
| SRR2545915 | Juvenile tuber | 7.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.300 |
| SRR5643514 | five period of Gastrodia elata | 14.460 | |
| SRR5643515 | five period of Gastrodia elata | 5.480 | |
| SRR5643524 | five period of Gastrodia elata | 9.630 | |
| SRR5643525 | five period of Gastrodia elata | 7.160 | |
| SRR5643528 | five period of Gastrodia elata | 5.980 | |
| SRR5643658 | five period of Gastrodia elata | 10.770 | |
| SRR5643659 | five period of Gastrodia elata | 1.980 | |
| SRR5643660 | five period of Gastrodia elata | 0.790 | |
| SRR5643661 | five period of Gastrodia elata | 0.410 | |
| SRR5643662 | five period of Gastrodia elata | 2.200 | |
| SRR5643663 | five period of Gastrodia elata | 1.200 | |
| SRR5643664 | five period of Gastrodia elata | 1.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.66 |
| Juven | Juvenile tuber | 3.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.33 | |
| Mother_Juven | Mother tuber of Juvenile | 1.57 |