Detail information of GWHGAAEX010115/evm.TU.scaffold_27.83
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672169818|ref|XP_008804951.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Phoenix dactylifera] |
| Swissprot | tr|O23337|PP311_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g14820 |
| trEMBL | tr|A0A061EMY0|A0A061EMY0_THECC | 0 | Pentatricopeptide repeat (PPR) superfamily protein {ECO:0000313|EMBL:EOY05712.1} |
| TAIR | AT4G14820 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000023 | 4790605 | 4792940 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010115
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 163 | 210 | 2.00E-09 |
| PF13041.5 | PPR_2 | 296 | 344 | 2.20E-09 |
| PF13041.5 | PPR_2 | 397 | 445 | 2.50E-12 |
| PF01535.19 | PPR | 472 | 496 | 0.16 |
| PF01535.19 | PPR | 539 | 565 | 0.7 |
| PF14432.5 | DYW_deaminase | 571 | 694 | 6.30E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.310 |
| SRR2545915 | Juvenile tuber | 1.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.300 |
| SRR5643514 | five period of Gastrodia elata | 2.170 | |
| SRR5643515 | five period of Gastrodia elata | 1.780 | |
| SRR5643524 | five period of Gastrodia elata | 2.650 | |
| SRR5643525 | five period of Gastrodia elata | 1.020 | |
| SRR5643528 | five period of Gastrodia elata | 0.500 | |
| SRR5643658 | five period of Gastrodia elata | 0.480 | |
| SRR5643659 | five period of Gastrodia elata | 2.150 | |
| SRR5643660 | five period of Gastrodia elata | 2.080 | |
| SRR5643661 | five period of Gastrodia elata | 2.120 | |
| SRR5643662 | five period of Gastrodia elata | 2.270 | |
| SRR5643663 | five period of Gastrodia elata | 1.930 | |
| SRR5643664 | five period of Gastrodia elata | 1.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.660 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.62 |
| Juven | Juvenile tuber | 2.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.96 | |
| Mother_Juven | Mother tuber of Juvenile | 0.80 |