Detail information of GWHGAAEX010120/evm.TU.scaffold_27.89


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|302348548|ref|YP_003816186.1|9.00E-21origin recognition complex subunit 1 Orc1 [Acidilobus saccharovorans 345-15]
KOGKOG15140Origin recognition complex, subunit 1, and related proteins
nrgi|743873223|ref|XP_010906762.1|0PREDICTED: origin recognition complex subunit 1-like [Elaeis guineensis]
Swissprottr|Q5SMU7|ORC1_ORYSJ0Origin of replication complex subunit 1 {ECO:0000303|PubMed:10996242}
trEMBLtr|M0TV86|M0TV86_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P31340_001}
TAIRAT4G126200origin of replication complex 1B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002349302494969875-
Transcript Sequence

Network for GWHGAAEX010120

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.28PHD1371821.20E-08
PF01426.17BAH2163081.00E-12
PF00004.28AAA4325774.50E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
K02603ORC1 Cell cycle map04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113

Gene Ontology

GO term OntologyName
GO:0003682Molecular Functionchromatin binding
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.360
SRR2545915Juvenile tuber10.480
SRP108465SRR5643513five period of Gastrodia elata10.320
SRR5643514five period of Gastrodia elata10.120
SRR5643515five period of Gastrodia elata10.200
SRR5643524five period of Gastrodia elata9.670
SRR5643525five period of Gastrodia elata14.920
SRR5643528five period of Gastrodia elata14.020
SRR5643658five period of Gastrodia elata14.970
SRR5643659five period of Gastrodia elata9.140
SRR5643660five period of Gastrodia elata10.500
SRR5643661five period of Gastrodia elata9.330
SRR5643662five period of Gastrodia elata8.710
SRR5643663five period of Gastrodia elata8.310
SRR5643664five period of Gastrodia elata7.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.750
SRR6049655Rhizomagastrodiae_C368-T10_good_18.900
SRR6049656Rhizomagastrodiae_C368-T07_good_18.160
SRR6049657Rhizomagastrodiae_C368-T07_good_112.850
SRR6049658Rhizomagastrodiae_C368-T04_good_110.930
SRR6049659Rhizomagastrodiae_C368-T04_good_111.890
SRR6049660Rhizomagastrodiae_C368-T01_good_19.700
SRR6049661Rhizomagastrodiae_C368-T04_good_111.630
SRR6049662Rhizomagastrodiae_C368-T01_good_110.000
SRR6049663Rhizomagastrodiae_C368-T01_good_18.980
SRR6049664Rhizomagastrodiae_C368-T10_good_18.770
SRR6049665Rhizomagastrodiae_C368-T10_good_18.770
SRP279888GastroGastrodia elata tuber 11.83
JuvenJuvenile tuber21.61
Mother_GastroMother tuber of Gastrodia elata 18.72
Mother_JuvenMother tuber of Juvenile 26.28