Detail information of GWHGAAEX010121/evm.TU.scaffold_27.91
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|170781032|ref|YP_001709364.1| | 7.00E-46 | peptidase [Clavibacter michiganensis subsp. sepedonicus] |
| nr | gi|672151034|ref|XP_008797388.1| | 2.17E-160 | PREDICTED: subtilisin-like protease SBT5.3 [Phoenix dactylifera] |
| Swissprot | tr|Q9MAP7|SBT35_ARATH | 8.00E-90 | Subtilisin-like protease SBT3.5 {ECO:0000303|PubMed:16193095} (Precursor) |
| trEMBL | tr|I1P7S2|I1P7S2_ORYGL | 4.00E-159 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0041800.1} |
| TAIR | AT4G26330 | 2.00E-119 | Subtilisin-like serine endopeptidase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000023 | 4996788 | 5006583 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010121
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05922.15 | Inhibitor_I9 | 185 | 264 | 7.00E-13 |
| PF00082.21 | Peptidase_S8 | 289 | 497 | 9.70E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.430 |
| SRR5643514 | five period of Gastrodia elata | 5.520 | |
| SRR5643515 | five period of Gastrodia elata | 3.670 | |
| SRR5643524 | five period of Gastrodia elata | 4.880 | |
| SRR5643525 | five period of Gastrodia elata | 2.910 | |
| SRR5643528 | five period of Gastrodia elata | 1.520 | |
| SRR5643658 | five period of Gastrodia elata | 2.770 | |
| SRR5643659 | five period of Gastrodia elata | 7.200 | |
| SRR5643660 | five period of Gastrodia elata | 3.810 | |
| SRR5643661 | five period of Gastrodia elata | 2.870 | |
| SRR5643662 | five period of Gastrodia elata | 2.810 | |
| SRR5643663 | five period of Gastrodia elata | 4.140 | |
| SRR5643664 | five period of Gastrodia elata | 3.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.50 |
| Juven | Juvenile tuber | 2.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.27 | |
| Mother_Juven | Mother tuber of Juvenile | 1.33 |