Detail information of GWHGAAEX010125/evm.TU.scaffold_27.99
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|18978046|ref|NP_579403.1| | 6.00E-09 | hypothetical protein PF1674 [Pyrococcus furiosus DSM 3638] |
| KOG | KOG1716 | 2.00E-33 | Dual specificity phosphatase |
| nr | gi|695016459|ref|XP_009395138.1| | 1.27E-38 | PREDICTED: dual specificity protein phosphatase 1B-like isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9ZR37|DUS1_ARATH | 6.00E-34 | Dual specificity protein phosphatase 1 |
| trEMBL | tr|M0SJV8|M0SJV8_MUSAM | 5.00E-39 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P00410_001} |
| TAIR | AT3G23610 | 2.00E-33 | dual specificity protein phosphatase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000023 | 5406389 | 5422403 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010125
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00782.19 | DSPc | 15 | 103 | 8.10E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006470 | Biological Process | protein dephosphorylation |
| GO:0016311 | Biological Process | dephosphorylation |
| GO:0016791 | Molecular Function | phosphatase activity |
| GO:0008138 | Molecular Function | protein tyrosine/serine/threonine phosphatase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.460 |
| SRR2545915 | Juvenile tuber | 13.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.640 |
| SRR5643514 | five period of Gastrodia elata | 12.600 | |
| SRR5643515 | five period of Gastrodia elata | 9.720 | |
| SRR5643524 | five period of Gastrodia elata | 9.790 | |
| SRR5643525 | five period of Gastrodia elata | 22.750 | |
| SRR5643528 | five period of Gastrodia elata | 17.250 | |
| SRR5643658 | five period of Gastrodia elata | 19.050 | |
| SRR5643659 | five period of Gastrodia elata | 20.370 | |
| SRR5643660 | five period of Gastrodia elata | 16.990 | |
| SRR5643661 | five period of Gastrodia elata | 24.160 | |
| SRR5643662 | five period of Gastrodia elata | 15.490 | |
| SRR5643663 | five period of Gastrodia elata | 21.290 | |
| SRR5643664 | five period of Gastrodia elata | 23.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.17 |
| Juven | Juvenile tuber | 11.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.56 | |
| Mother_Juven | Mother tuber of Juvenile | 11.04 |