Detail information of GWHGAAEX010134/evm.TU.scaffold_27.110


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|695012385|ref|XP_009392950.1|6.39E-25PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9FKP0|PSRP6_ARATH4.00E-2150S ribosomal protein 6, chloroplastic (Precursor)
trEMBLtr|M0SHY6|M0SHY6_MUSAM2.00E-25Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P26200_001}
TAIRAT5G178703.00E-20plastid-specific 50S ribosomal protein 6

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002359973816014736+
Transcript Sequence

Network for GWHGAAEX010134

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17257.1DUF532325821.10E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0019843Molecular FunctionrRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0009507Cellular Componentchloroplast
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms38.760
SRR2545915Juvenile tuber39.830
SRP108465SRR5643513five period of Gastrodia elata34.800
SRR5643514five period of Gastrodia elata35.860
SRR5643515five period of Gastrodia elata37.900
SRR5643524five period of Gastrodia elata35.160
SRR5643525five period of Gastrodia elata29.740
SRR5643528five period of Gastrodia elata27.760
SRR5643658five period of Gastrodia elata25.810
SRR5643659five period of Gastrodia elata47.240
SRR5643660five period of Gastrodia elata45.780
SRR5643661five period of Gastrodia elata55.180
SRR5643662five period of Gastrodia elata53.390
SRR5643663five period of Gastrodia elata53.160
SRR5643664five period of Gastrodia elata53.140
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.280
SRR6049655Rhizomagastrodiae_C368-T10_good_164.310
SRR6049656Rhizomagastrodiae_C368-T07_good_125.620
SRR6049657Rhizomagastrodiae_C368-T07_good_126.570
SRR6049658Rhizomagastrodiae_C368-T04_good_123.590
SRR6049659Rhizomagastrodiae_C368-T04_good_125.750
SRR6049660Rhizomagastrodiae_C368-T01_good_125.570
SRR6049661Rhizomagastrodiae_C368-T04_good_127.780
SRR6049662Rhizomagastrodiae_C368-T01_good_126.890
SRR6049663Rhizomagastrodiae_C368-T01_good_121.470
SRR6049664Rhizomagastrodiae_C368-T10_good_131.270
SRR6049665Rhizomagastrodiae_C368-T10_good_131.270
SRP279888GastroGastrodia elata tuber 69.38
JuvenJuvenile tuber54.92
Mother_GastroMother tuber of Gastrodia elata 55.89
Mother_JuvenMother tuber of Juvenile 61.34