Gene detail

Detail information of GWHGAAEX010137/evm.TU.scaffold_27.122

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|57641258\|ref\|YP_183736.1\|	3.00E-27	glycosyl transferase family protein [Thermococcus kodakarensis KOD1]
KOG	KOG1111	0	N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase
nr	gi\|695025218\|ref\|XP_009399853.1\|	0	PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit [Musa acuminata subsp. malaccensis]
trEMBL	tr\|A0A061GX43\|A0A061GX43_THECC	0	UDP-Glycosyltransferase superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY34435.1}
TAIR	AT3G45100	0	UDP-Glycosyltransferase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000023	6613117	6656346	-

Transcript Sequence
>GWHTAAEX010137 ATGATCGATCAAACTCAAAAACACAAGATTCTAATGGTTTCTGACTTTTTCTACCCCAATTTCGGTGGGGTAGAAAGTCATATTTATTATTTATCGCAATGCTTGATCAAGCTTGGTCACAAGGTAGTGGTTGCTACACATTCTTATGGAAATCGCTCTGGTGTGAGATATATGACTGGTGGCTTGAAAGTTTATTACATACCTTGGAGACCTTTTCTTATGCAGAATACCCTACCAACGTTCTTTGGAACTCTTCCTATTATAAGGACTATCCTTGTTCGTGAGAGGATATCCGTGGTCCATGGGCACCAGGCCTTTTCAACACTTTGCCATGAAGCCTTAATGCATGCTAGAACAATGGGATACAAAGCTGTTTTCACTGATCATTCTTTATACGGGTTTGCTGATGTTGGAAGCATTCACATGAATAAAGTGCTGCAATTCACTCTTTCAGATATAGATCAGGCTATCTGTGTTTCTCACACAAGCAAAGAAAACACTGTCCTACGTTCTGGTATTGCTCCGGAAAAGGTATTTGTAATACCCAATGCTGTGGATACTGCAATTTTTACACCTGCCCCTGAACGGCTCAGTTATGAAGAAATTGTTATAGTGATCATCAGTAGACTGGTATATCGCAAAGGTGCTGATCTGCTTGTTGAGGTTATTCCTGAAGTTTGCCTGCGATATCCAAATGTCCGTTTTGTTATTGGGGGAGATGGCTTAAAACGTGTGCGGTTGGAAGAAATGAGGGAGAAATATTCTCTTCAGGATAGAGTTGAAATGCTTGGAGCCGTTCCACATGCTCAAGTGAGATCTGTACTAGTGTCTGGTCATATTTTCCTGAACAGCTCTCTCACAGAAGCTTTTTGTATAGCTATTCTAGAAGCAGCTAGTTGTGGATTGCTTACTGTCAGCACAAGAGTTGGTGGAGTTCCTGAGGTTTTGCCTGATGATATGATTGTGCTTGCTGAACCTACGCCTGTTGATATGGTCTGTGCTATCACAAGAGCCATTCAAATGCTTCCATATATCAACCCACATGCCATGCATGCTCGGATGAAAAAATTGTATAGTTGGCATGACGTGGCTAAGAGAACTGAACTTGTCTATGACCGTGCGTTGATGTGTTCAGATGAGAGCTTCTTGGAACGTCTTCCACGGTATCATAAGTGCGGGGCTTGCGCTGGGAAGCTGTTTTGTTTGGTTATGATAATCAATTTCTTGCTCTGGCAGCTGCTTCAATTGTGGCAGCCTTCAAAAAGAATAGATGAGGCACCTGATATTCCTTTACCTGAGAATCATGGGAAGAGGTTTATTAGGAGAATACCTAAAGGTGGAAAAAGGGGTAGGTTTCCGATGATCCTAAGAGAAAGTCCCGCAAGTTCCACAGGCGCTCCCAAGTGCTCAAGAATTCCCCAGCAAGTGCCAAAACCAGAGAGGAAGAAAATCGGGAGCGTAGTCGGGTGCAACGCTCGCTCGACACCCGACTGGCTGCGGTTCGAATACCAGAAATGCCGAATTTTTTTTTCTTTTCTGCGAATCGACGGACTTCAAAGCGGACTTCAACGCTCGCTCGATACTTTTAATCCTTATCTTCGCACAGATCGCAGACAGAGGGTTATTCTTAGGGCTGGCTTCTCTTTTTCGCTCTCTCGACTCTCGAGTCTCTGCTCGCTTCTCAGCTCTCGGCTCTCGCCTTCTGCTAGCTGTCGGATCCTTCTGTCCCGAGTTCTGAGTCTGATCTTGGTAGCTCTTTGGCTGATGTTGCTTTGGCTGCTACTTCTTGGACTGCTGCTGCTTTGGCTGCTGCTGCTTGGGTTGATGCTGCCTAGGCTGCTGCTGCCAGTTGCCTGGCCTGGTGTTGCCTCTACTGCTGCTGCCTGGGTTGCTGCTGCCAGCTTCCTCTGCTCTTTGGCTGATGTTGCTTTGGCTACTACTTCTTGGGTTGGTATTGCTTTGGCTACTACTGCTTGGGTTGATGCTGCCTAG

Network for GWHGAAEX010137

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08288.11	PIGA	47	136	2.20E-42
PF00534.19	Glycos_transf_1	200	320	1.10E-24

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT4

KEGG pathway

KO	Enzyme	pathway	mapID
K03857	PIGA, GPI3	Metabolic pathways	map01100
K03857	PIGA, GPI3	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	Biological Process	GPI anchor biosynthetic process

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.860
SRP064423	SRR2545915	Juvenile tuber	12.510
SRP108465	SRR5643513	five period of Gastrodia elata	7.990
	SRR5643514	five period of Gastrodia elata	6.350
	SRR5643515	five period of Gastrodia elata	6.350
	SRR5643524	five period of Gastrodia elata	6.010
	SRR5643525	five period of Gastrodia elata	10.050
	SRR5643528	five period of Gastrodia elata	9.860
	SRR5643658	five period of Gastrodia elata	12.260
	SRR5643659	five period of Gastrodia elata	5.540
	SRR5643660	five period of Gastrodia elata	7.050
	SRR5643661	five period of Gastrodia elata	5.750
	SRR5643662	five period of Gastrodia elata	7.100
	SRR5643663	five period of Gastrodia elata	8.440
	SRR5643664	five period of Gastrodia elata	6.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.380
SRP279888	Gastro	Gastrodia elata tuber	8.54
	Juven	Juvenile tuber	12.21
	Mother_Gastro	Mother tuber of Gastrodia elata	5.07
	Mother_Juven	Mother tuber of Juvenile	7.29