Detail information of GWHGAAEX010140/evm.TU.scaffold_27.125
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|268317165|ref|YP_003290884.1| | 1.00E-33 | Superoxide dismutase [Rhodothermus marinus DSM 4252] |
| KOG | KOG0441 | 2.00E-68 | Cu2+/Zn2+ superoxide dismutase SOD1 |
| nr | gi|378532207|gb|AFC17494.1| | 2.81E-84 | copper/zinc superoxide dismutase 1 [Musa acuminata AAA Group] |
| Swissprot | tr|O49044|SODC2_MESCR | 3.00E-72 | Superoxide dismutase [Cu-Zn] 2 |
| trEMBL | tr|H6X1L6|H6X1L6_MUSAC | 1.00E-84 | Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393} |
| TAIR | AT5G18100 | 2.00E-68 | copper/zinc superoxide dismutase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000023 | 6846427 | 6889293 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010140
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00080.19 | Sod_Cu | 20 | 158 | 8.50E-48 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04565 | SOD1 | Peroxisome | map04146 |
| Longevity regulating pathway - multiple species | map04213 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006801 | Biological Process | superoxide metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0004784 | Molecular Function | superoxide dismutase activity |
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.630 |
| SRR2545915 | Juvenile tuber | 8.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.040 |
| SRR5643514 | five period of Gastrodia elata | 20.990 | |
| SRR5643515 | five period of Gastrodia elata | 14.060 | |
| SRR5643524 | five period of Gastrodia elata | 20.680 | |
| SRR5643525 | five period of Gastrodia elata | 6.280 | |
| SRR5643528 | five period of Gastrodia elata | 5.440 | |
| SRR5643658 | five period of Gastrodia elata | 6.830 | |
| SRR5643659 | five period of Gastrodia elata | 9.740 | |
| SRR5643660 | five period of Gastrodia elata | 11.250 | |
| SRR5643661 | five period of Gastrodia elata | 12.320 | |
| SRR5643662 | five period of Gastrodia elata | 9.750 | |
| SRR5643663 | five period of Gastrodia elata | 10.040 | |
| SRR5643664 | five period of Gastrodia elata | 9.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.94 |
| Juven | Juvenile tuber | 15.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.01 | |
| Mother_Juven | Mother tuber of Juvenile | 13.70 |