Detail information of GWHGAAEX010146/evm.TU.scaffold_270.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428224487|ref|YP_007108584.1| | 9.00E-126 | diaminopimelate epimerase [Geitlerinema sp. PCC 7407] |
| nr | gi|672114305|ref|XP_008776383.1| | 0 | PREDICTED: diaminopimelate epimerase, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|Q9LFG2|DAPF_ARATH | 3.00E-172 | Diaminopimelate epimerase, chloroplastic (Precursor) |
| trEMBL | tr|I1IHA9|I1IHA9_BRADI | 1.00E-174 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI4G04040.4} |
| TAIR | AT3G53580 | 9.00E-172 | diaminopimelate epimerase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000304 | 470786 | 506813 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010146
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01678.18 | DAP_epimerase | 76 | 196 | 5.80E-35 |
| PF01678.18 | DAP_epimerase | 230 | 351 | 1.10E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009089 | Biological Process | lysine biosynthetic process via diaminopimelate |
| GO:0008837 | Molecular Function | diaminopimelate epimerase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.660 |
| SRR2545915 | Juvenile tuber | 29.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.530 |
| SRR5643514 | five period of Gastrodia elata | 41.460 | |
| SRR5643515 | five period of Gastrodia elata | 45.030 | |
| SRR5643524 | five period of Gastrodia elata | 38.390 | |
| SRR5643525 | five period of Gastrodia elata | 36.350 | |
| SRR5643528 | five period of Gastrodia elata | 39.970 | |
| SRR5643658 | five period of Gastrodia elata | 29.640 | |
| SRR5643659 | five period of Gastrodia elata | 43.980 | |
| SRR5643660 | five period of Gastrodia elata | 47.590 | |
| SRR5643661 | five period of Gastrodia elata | 50.940 | |
| SRR5643662 | five period of Gastrodia elata | 55.990 | |
| SRR5643663 | five period of Gastrodia elata | 57.140 | |
| SRR5643664 | five period of Gastrodia elata | 54.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 44.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 50.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 51.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 51.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 76.50 |
| Juven | Juvenile tuber | 56.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.72 | |
| Mother_Juven | Mother tuber of Juvenile | 41.50 |