Detail information of GWHGAAEX010150/evm.TU.scaffold_272.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743881629|ref|XP_010908946.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g73710 [Elaeis guineensis] |
| Swissprot | tr|Q9C9U0|PP118_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g73710 |
| trEMBL | tr|A5AI36|A5AI36_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN75708.1} |
| TAIR | AT1G73710 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000277 | 87188 | 93764 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010150
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 171 | 215 | 1.30E-07 |
| PF13041.5 | PPR_2 | 294 | 340 | 1.90E-13 |
| PF13041.5 | PPR_2 | 362 | 410 | 1.40E-07 |
| PF17177.3 | PPR_long | 518 | 634 | 2.20E-11 |
| PF01535.19 | PPR | 645 | 672 | 8.00E-05 |
| PF01535.19 | PPR | 681 | 706 | 0.035 |
| PF13041.5 | PPR_2 | 744 | 791 | 2.30E-07 |
| PF01535.19 | PPR | 851 | 879 | 0.00021 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.630 |
| SRR2545915 | Juvenile tuber | 8.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.950 |
| SRR5643514 | five period of Gastrodia elata | 6.580 | |
| SRR5643515 | five period of Gastrodia elata | 6.730 | |
| SRR5643524 | five period of Gastrodia elata | 6.470 | |
| SRR5643525 | five period of Gastrodia elata | 7.230 | |
| SRR5643528 | five period of Gastrodia elata | 5.080 | |
| SRR5643658 | five period of Gastrodia elata | 6.560 | |
| SRR5643659 | five period of Gastrodia elata | 8.150 | |
| SRR5643660 | five period of Gastrodia elata | 8.560 | |
| SRR5643661 | five period of Gastrodia elata | 7.310 | |
| SRR5643662 | five period of Gastrodia elata | 7.460 | |
| SRR5643663 | five period of Gastrodia elata | 8.320 | |
| SRR5643664 | five period of Gastrodia elata | 6.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.88 |
| Juven | Juvenile tuber | 7.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.81 | |
| Mother_Juven | Mother tuber of Juvenile | 5.75 |