Detail information of GWHGAAEX010159/evm.TU.scaffold_274.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|433653951|ref|YP_007297659.1|1.00E-75DNA/RNA helicase, superfamily II, SNF2 family [Thermoanaerobacterium thermosaccharolyticum M0795]
KOGKOG03860Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily)
nrgi|672167829|ref|XP_008803890.1|0PREDICTED: chromatin structure-remodeling complex protein SYD-like isoform X1 [Phoenix dactylifera]
Swissprottr|F4IHS2|SYD_ARATH0Chromatin structure-remodeling complex protein SYD
trEMBLtr|W1NVN2|W1NVN2_AMBTC0Uncharacterized protein {ECO:0000313|EMBL:ERN01682.1}
trEMBLtr|W1NVN2|W1NVN2_AMBTC1.00E-33Uncharacterized protein {ECO:0000313|EMBL:ERN01682.1}
TAIRAT2G282900P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000271208607259682+
Transcript Sequence

Network for GWHGAAEX010159

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00176.22SNF2_N129515758.00E-66
PF00271.30Helicase_C160317161.90E-17
PF14619.5SnAC181019063.70E-22
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042393Molecular Functionhistone binding
GO:0005524Molecular FunctionATP binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms82.370
SRR2545915Juvenile tuber40.560
SRP108465SRR5643513five period of Gastrodia elata28.280
SRR5643514five period of Gastrodia elata27.700
SRR5643515five period of Gastrodia elata26.260
SRR5643524five period of Gastrodia elata26.810
SRR5643525five period of Gastrodia elata30.450
SRR5643528five period of Gastrodia elata23.120
SRR5643658five period of Gastrodia elata34.240
SRR5643659five period of Gastrodia elata37.330
SRR5643660five period of Gastrodia elata33.780
SRR5643661five period of Gastrodia elata33.150
SRR5643662five period of Gastrodia elata34.500
SRR5643663five period of Gastrodia elata38.820
SRR5643664five period of Gastrodia elata47.060
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_146.160
SRR6049655Rhizomagastrodiae_C368-T10_good_135.760
SRR6049656Rhizomagastrodiae_C368-T07_good_132.850
SRR6049657Rhizomagastrodiae_C368-T07_good_157.110
SRR6049658Rhizomagastrodiae_C368-T04_good_147.380
SRR6049659Rhizomagastrodiae_C368-T04_good_162.050
SRR6049660Rhizomagastrodiae_C368-T01_good_149.960
SRR6049661Rhizomagastrodiae_C368-T04_good_147.190
SRR6049662Rhizomagastrodiae_C368-T01_good_123.950
SRR6049663Rhizomagastrodiae_C368-T01_good_128.140
SRR6049664Rhizomagastrodiae_C368-T10_good_123.930
SRR6049665Rhizomagastrodiae_C368-T10_good_123.930
SRP279888GastroGastrodia elata tuber 46.34
JuvenJuvenile tuber61.98
Mother_GastroMother tuber of Gastrodia elata 24.81
Mother_JuvenMother tuber of Juvenile 53.79