Detail information of GWHGAAEX010166/evm.TU.scaffold_275.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|42524005|ref|NP_969385.1|5.00E-97multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
KOGKOG00540Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily
nrgi|743769222|ref|XP_010914891.1|0PREDICTED: ABC transporter C family member 3-like [Elaeis guineensis]
Swissprottr|Q9LK64|AB3C_ARATH0ABC transporter C family member 3
trEMBLtr|A0A059Q075|A0A059Q075_9POAL0Uncharacterized protein {ECO:0000313|EMBL:AGT16648.1}
TAIRAT3G130800multidrug resistance-associated protein 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002708298785217+
Transcript Sequence

Network for GWHGAAEX010166

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00664.22ABC_membrane1093665.80E-24
PF00005.26ABC_tran4435914.10E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0005524Molecular FunctionATP binding
GO:0016887Molecular FunctionATPase activity
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.450
SRR2545915Juvenile tuber1.530
SRP108465SRR5643513five period of Gastrodia elata3.420
SRR5643514five period of Gastrodia elata1.220
SRR5643515five period of Gastrodia elata1.950
SRR5643524five period of Gastrodia elata1.680
SRR5643525five period of Gastrodia elata0.530
SRR5643528five period of Gastrodia elata4.600
SRR5643658five period of Gastrodia elata0.480
SRR5643659five period of Gastrodia elata1.340
SRR5643660five period of Gastrodia elata1.490
SRR5643661five period of Gastrodia elata1.650
SRR5643662five period of Gastrodia elata1.150
SRR5643663five period of Gastrodia elata0.880
SRR5643664five period of Gastrodia elata1.840
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.500
SRR6049655Rhizomagastrodiae_C368-T10_good_13.020
SRR6049656Rhizomagastrodiae_C368-T07_good_12.440
SRR6049657Rhizomagastrodiae_C368-T07_good_12.540
SRR6049658Rhizomagastrodiae_C368-T04_good_12.390
SRR6049659Rhizomagastrodiae_C368-T04_good_13.880
SRR6049660Rhizomagastrodiae_C368-T01_good_12.480
SRR6049661Rhizomagastrodiae_C368-T04_good_12.190
SRR6049662Rhizomagastrodiae_C368-T01_good_12.360
SRR6049663Rhizomagastrodiae_C368-T01_good_12.300
SRR6049664Rhizomagastrodiae_C368-T10_good_11.630
SRR6049665Rhizomagastrodiae_C368-T10_good_11.630
SRP279888GastroGastrodia elata tuber 0.91
JuvenJuvenile tuber1.41
Mother_GastroMother tuber of Gastrodia elata 1.29
Mother_JuvenMother tuber of Juvenile 0.55