Detail information of GWHGAAEX010171/evm.TU.scaffold_275.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|225849930|ref|YP_002730164.1| | 2.00E-08 | ankyrin domain protein [Persephonella marina EX-H1] |
| KOG | KOG0504 | 0 | FOG: Ankyrin repeat |
| nr | gi|695074363|ref|XP_009384381.1| | 0 | PREDICTED: regulatory protein NPR6-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9ZVC2|NPR5_ARATH | 0 | Regulatory protein NPR5 |
| trEMBL | tr|A5AIQ0|A5AIQ0_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN80112.1} |
| TAIR | AT2G41370 | 0 | Ankyrin repeat family protein / BTB/POZ domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000270 | 184900 | 187383 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010171
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00651.30 | BTB | 7 | 98 | 3.30E-14 |
| PF11900.7 | DUF3420 | 185 | 239 | 2.00E-08 |
| PF12796.6 | Ank_2 | 245 | 327 | 5.40E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TRAF |
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14508 | NPR1 | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 399.760 |
| SRR2545915 | Juvenile tuber | 376.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 241.450 |
| SRR5643514 | five period of Gastrodia elata | 220.810 | |
| SRR5643515 | five period of Gastrodia elata | 185.900 | |
| SRR5643524 | five period of Gastrodia elata | 197.700 | |
| SRR5643525 | five period of Gastrodia elata | 188.340 | |
| SRR5643528 | five period of Gastrodia elata | 87.000 | |
| SRR5643658 | five period of Gastrodia elata | 164.840 | |
| SRR5643659 | five period of Gastrodia elata | 229.400 | |
| SRR5643660 | five period of Gastrodia elata | 306.260 | |
| SRR5643661 | five period of Gastrodia elata | 292.390 | |
| SRR5643662 | five period of Gastrodia elata | 239.340 | |
| SRR5643663 | five period of Gastrodia elata | 226.820 | |
| SRR5643664 | five period of Gastrodia elata | 268.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 377.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 525.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 441.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 571.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 447.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 432.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 422.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 509.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 226.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 172.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 178.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 178.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 166.44 |
| Juven | Juvenile tuber | 117.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 178.60 | |
| Mother_Juven | Mother tuber of Juvenile | 149.96 |