Gene detail

Detail information of GWHGAAEX010177/evm.TU.scaffold_275.19_evm.TU.scaffold_275.20

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1473	1.00E-111	Nucleosome remodeling factor, subunit NURF301/BPTF
nr	gi\|565393295\|ref\|XP_006362316.1\|	0	PREDICTED: uncharacterized protein LOC102579382 [Solanum tuberosum]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	6.00E-10	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|A0A096S3Y8\|A0A096S3Y8_MAIZE	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G128176_P03}
trEMBL	tr\|A0A096S3Y8\|A0A096S3Y8_MAIZE	3.00E-11	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G128176_P03}
TAIR	AT5G22760	1.00E-111	PHD finger family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000270	368468	388334	+

Transcript Sequence
>GWHTAAEX010177 TTAAAGAACCTGTGTCGTGCGCCGGTGCCGTTTGTCTGCGTCCTCTTGTCTTATCGTGTGCCGGCGAGACTGCTTGCTACCGGAAATCGGAAACTGTGATGATGTCAAAGAACCGGAGCTGACACCTTAGGGCTTGGGAGGTCCACTCATTTTCTTCTCAAACGGAGGATGGAGCTGGTTGGAAAAACAGTTCAGAAGCAGTTTCTAGGGCTGGGGTCCATCTCCGGCGTCATCGATTCATATGACGCTTCCGCCGGTTATTTTAGCATTCTATATGGTGACGGAGCTTCCGAGGAAGTTGATGTAGATGAGATCGCCTTGATCCTGAGGGGAATGGGACACGAGCCTCCTACTGGAACCTTTATGCCCCGGACTAATCGAGGCCGATCGCGTAAGAAACGCTGCCGCCTTGATCTGGGAGACGGACGCCAAGTTTCGGCTGAAGCCTATGCAAATGGCTTATGTATCGATAGTTCTTGGTTGGGGGGTATATTTCACATGGATGAACTGGGGGGTAATGCCGCGCATGAATGTAATGGAAGGATGGATATGAGTTCGGTTGATGATTTGAAAGAAAACGTTTCTCTGGATGGGTCTGAGGTTGCAGAAGCCCGCATGGGAGAAATTTCGCCAGATATTTGCACTGCCGGGCAAAGGCAGAATGAAGATTTAGGGGGTGAAGGGATTTTGGTCGATTTGGAGAGCAAATATGAGGGAAGCCAGAGGAAAAGGAGAAAAATTTCCGGGCAGCCCAAACCATCTCCGGATATGCCTCTGCGGAGGAGCACTCGTAGACCAACTACTACTATGCTGTCTCCCCCTGACAATTTTATCCTCAAGAATGAGCCGGCCTTTGAAGACGCAGAGAACAACGGCACAAATTCAGAGTCTGGTGCTGACGAATCCAATTCCAAATCCACATTACCGCCTTCATCTAAGGACTTGGATGTGGACGGCCTTCCTGTCCTTCATCTCTTCTCCGTTTACTCTTGTCTAAGGTCCTTTAGTAGGTCCCTATTTCTGAGTCCTTTCCGTTTGGAAACTTTTGTGGCTGCATTGAAGTGCAAATATGCCAACCCTTTGATTGACTCCATACACTTCTCTCTTTTGCACGCTCTCAAACCTCATTTGAAGCTTCTTATGGAGGAGGGATTGCAGCCAGCAACTAATTGCCTTAGGAATCTTAACTGGGATATGCTGGATTTAGTTACCTGGCCTATCTTTCTAGTTGAGTATATGCTATTTTGTGGTTCTGCAATGAGGAAAGACATAAAGCTTGTTAATTTGAAGCTTTTGGATGCTGAATACTACGAACAGCCTGCGGAAGTGAAGCTTGAGATTCTTCATTGTTTGTGCGATGATGCTGTTCAAGTAGAATGCTTGAGGTCAGCGTTTAATCGTAGGGTAACTGATTTGGAGCTCACTTTATATTCCAACAATAATATGTATTATTTGAGGAAGCAAAATTATTCAGCAAAGCGTGATGGAGAATGTTCTTTAGCACAAGAGGGTATTGATGACATTGCTGATGGAAATAGCGATGAATGTTGCCTCTGCAAAATGGATGGCAATTTGATATGCTGTGATGGCTGCCCTGCTGCATTTCATTCCAGATGTGTGGGGATGGTGAAAAATCATTTACCTGATGGTGACTGGTATTGTCCAGAGTGCCTGGTTGATAAAAATGGAATAGTTAGTTTTTTTATGCCATTCAAGGGGGCTGATTTTCTCGGAAGAGATTCACATGGGCGGCTGTATTCTGGTTGCTGTGGTTATCTGTTGGTGTTTGATTCATGCGATTCCAATCATTTTTGTCATTATTACAACAAGAATGATTTAAGTTCTGTCATCAGTTTCTTGAAGTCAGAACCATCTTTCAATGTCGTTAGAAATGCAATAGCTGGTTACTGGGGAATTCCTATCGAGGATTCTTATGGAGCTGAGAGTACTGTTCCTGTGATTGGTGGTTCCAAAAGTTGTGATATTTCTTTTTCAGCTCAACAAAATTCTGTAATCTCTATTCAAGACGAGGAGTTTGCTGTTTCTGGAACAGTGGGTGAAGTTGCATCTGTAAAACCCAATGAACAAACTGTGGGCTTTGATGAAACTATTCTGGATCCTAGATGGAGCTGTAATTCTCAAAAGATGAAAGGCGTCATTTTTCAGGTGCAATCTGATCCTTTTAGTTACGTTAACTATTATACTTTTGGCCAAGTCGCTGCTGCTATGGCTGAAGAGTTGTTTAAATCTTCAGAGATCAACAACACTGAGTCTTCGATATCCGATGAAGTTATTAAATCAGATCAATTGAAAGTAATTTGTAAGAAATTTTCACAATGGTGTTGGTATAACTATTATAATCTAATGGTTGAGACACAAAAGGAGGGCTGCGGTTGGTGCTTTGCTTGTAGAAGCTCAAACGATGCTGAATGCTTATTTAAAGTTGTTAATGAGAAACATTTAGAGGGCATTAAATTCAATCTAGATGATTCCACTAACCTTACATGTGTGGACTCTGAAAGAAATAAGAAAAGCCATATACTGTTTGCCATACATCATATTTTATCAATCGAAGATCGTGTGCGAAGCTTTCTTTCGGGTCCCTGGGAGAAGCCACATTATAGCACGCAATGGCGCAGGGCCATTCTAGAAGCTATTGATGTTAATTCTCTCAAGTTCCTGCTTCTTTCTTTAGAATCCAATTTGAGGTGTGTTTCTTTCTCAGCTGAATGGCTGAAACCTGTAGATTCCGATCAGACAGTTGGTTCTCCCTCTTTTGAATCAACAAGATCTCATTGGTGGAGGGGTGGAAAATTATCTCGGAAATTGTTTTGCTGGAAGATGCTGCCTCGTTTTGTGGCTTCCAAGTATGGTCGTCAAGCTGGGCATAAGAAGATTCCAAATTTATTTTATCATGATGGTTTAGAGTTTGCAAAGAGAAGCAAAAGCATTGCTTGGCGAGTTGCTGTTGAGATGTCTGAAACTGTTGCTCAGCTCATTTATCAGGTAAAAGATCTGGATTCAAGCATAAAATGGGCAGAAATTTTTAGCACCCATATTTTCTCTCAGTGCACAAAAGAGTCTAAGAAAGTAGAAAAGCAATTTAAGTATGTGCTTGTACGAAAAAAGTGTGTTGAGGGAACAGAACTAAAATATTTGCTTGATTTTGGCAAGAGGGAGACAATTCCTGCTACTGTTACTAAGTATGGAGTATTGTTTGAAGAAAGCTCTGATGAGCGGAAGAGATTTTGGCTGAGTGAAGCTCATGTTCCTTTAAATTTAATTAGAGCTTTTGAGGAGAGAAAGTTATCTCGCTTAATCAAGAAAACAAATTCTGTAGTAATTTCTGAAAAGAGGAGCATATTTATAAAGAAGAAAACTAAAAAATTCAAAGGACTTTCCTACCTTCTTACAAAAGTCAGGAACTCTGAAAAGCATTACTGCGGTTACTGCAATAAGGATATGCTACTAAGGGAGGCTGTGAGCTGCTGCTACTGTGATGGGTTATTTCACAGAAAACATTTTAGAGTGCCAAAAGGTGCTATGGAAACTCCTACCTCTTGTTTTAAATGCAAAGAGAAGGAAAATGTAAAAGCAAGTCCTTTTCAGAATATAGCAGCTGGCTGGAAAAGAAAGACTTCCGTATCTAGGAAGGGAATTCGGGTCTCTATGTCGAAAAAGTCAAATGAAAGCGTAGACTTCTTTGGTGAGAATGTGAAGGATAATAGAATCTTAGTGATCAAGAAATCCAAAGAAAACAAACTTTCCATTTGTAAGAAGGCTTTCTTGGCGAAGTCAAAAGAAAGTAAACAATTCATGGCCAAGAAGTTAAGTGAAAATAAGGTTTCCTTGGCTAGAAGGTCAAAAAAAATTATAGTTTCCATGGCAGGTCAGTGCAGGAAAAATCCTGTCCGCTTAGCCAGAAAAGTGAAACAAAATATATTCTCCTTGGCTAGAAAGTCAAAATTAAATCACACACAAGCAAAAGAAAAAGTTACCAATAAAAGAAAAAGGAAAACTGATCAAGATAAGGGACATAGTATCTCTTCCAAAAAAGCAATGCCCTTGAAATCAGATAATTTTGTGAACTGGAGCAAGAAGAAGAGATCTGTTTTATTTCATTCCCATTGGTTAAATGGCCTATTATGGGTAAGCAGCCCTTCGAATGAACGAGGAAGGACTTTCCGTGAAAAAAATGTTTTTCTTCAGTTTCAGCCTACAGATGATGGTTCTGCTCAGCTGATGTGCTGCCTCTGCCATGGTGATTACAAGACTGGAGATATTTTTCTTAGTTGTGAAAGTTGTCGAGATTGGTTCCACGGTGAGGCCTTTGGTCTTCAGCTTGAGAGTGTCAGTAATGTTGCTGGGTTTAAATGCCCCCACTGTCGCAATAGAAATGTTCCTGTGTGTCCATTTACAAAAAACCAAACTAATGGCACTGTTATTATAAAAAAAGGTTACAATGCTGTTTCTGTACCCGGGGATATTCAGCATTATAAACGTACAAGAAAGTTTCAAAATGCTTCTTGTAAATACTGCCTTTCCTCAGCCCCTTGTAAAAATCATTCAAAGGTGATAGAAGTCCCTTCACATTGCGAAGATTACATTGTCTTGTCCAACAAAACTTTTTCCACCAGGTCTAGCACTGTACATCTTTCTGGGCATGAACACGCAAATGCTGATTCACTAGTGAAGAGAATATACTCAAAATAAAGTTGAAATCACATAGACTAGAGGAGAATCTGAGAAGGGCAGCAAGCACGTCTAGATAGCTTTGATCTGGACTATATCTTTTCAGAGCCGTGCGTAGAGGAAAATGGTTGCAGTACATTTCATTAATGTTGAGGTTTCAGTACATTAATCATTAGCTTTAACCATAGTCTGTACTCATATTTGGATATTCAATATTCATTCTCTTATTTACTATTGCGTTTTATGCGTTTCCTTAATTTTTAATACCATGTGCGTTTAACTTTTTTTGACGTTTGGACGCTGAAGCACATGCATATTGCTTTGCTTAGTATTCTATTTATTTATCAATATATTTATTCTGCATGATTTGATGGA

Network for GWHGAAEX010177

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02791.16	DDT	268	317	1.40E-11
PF15612.5	WHIM1	371	400	0.00071
PF00628.28	PHD	460	502	6.80E-08

Protein Sequence

>GWHPAAEX010177
MELVGKTVQKQFLGLGSISGVIDSYDASAGYFSILYGDGASEEVDVDEIALILRGMGHEPPTGTFMPRTNRGRSRKKRCRLDLGDGRQVSAEAYANGLCIDSSWLGGIFHMDELGGNAAHECNGRMDMSSVDDLKENVSLDGSEVAEARMGEISPDICTAGQRQNEDLGGEGILVDLESKYEGSQRKRRKISGQPKPSPDMPLRRSTRRPTTTMLSPPDNFILKNEPAFEDAENNGTNSESGADESNSKSTLPPSSKDLDVDGLPVLHLFSVYSCLRSFSRSLFLSPFRLETFVAALKCKYANPLIDSIHFSLLHALKPHLKLLMEEGLQPATNCLRNLNWDMLDLVTWPIFLVEYMLFCGSAMRKDIKLVNLKLLDAEYYEQPAEVKLEILHCLCDDAVQVECLRSAFNRRVTDLELTLYSNNNMYYLRKQNYSAKRDGECSLAQEGIDDIADGNSDECCLCKMDGNLICCDGCPAAFHSRCVGMVKNHLPDGDWYCPECLVDKNGIVSFFMPFKGADFLGRDSHGRLYSGCCGYLLVFDSCDSNHFCHYYNKNDLSSVISFLKSEPSFNVVRNAIAGYWGIPIEDSYGAESTVPVIGGSKSCDISFSAQQNSVISIQDEEFAVSGTVGEVASVKPNEQTVGFDETILDPRWSCNSQKMKGVIFQVQSDPFSYVNYYTFGQVAAAMAEELFKSSEINNTESSISDEVIKSDQLKVICKKFSQWCWYNYYNLMVETQKEGCGWCFACRSSNDAECLFKVVNEKHLEGIKFNLDDSTNLTCVDSERNKKSHILFAIHHILSIEDRVRSFLSGPWEKPHYSTQWRRAILEAIDVNSLKFLLLSLESNLRCVSFSAEWLKPVDSDQTVGSPSFESTRSHWWRGGKLSRKLFCWKMLPRFVASKYGRQAGHKKIPNLFYHDGLEFAKRSKSIAWRVAVEMSETVAQLIYQVKDLDSSIKWAEIFSTHIFSQCTKESKKVEKQFKYVLVRKKCVEGTELKYLLDFGKRETIPATVTKYGVLFEESSDERKRFWLSEAHVPLNLIRAFEERKLSRLIKKTNSVVISEKRSIFIKKKTKKFKGLSYLLTKVRNSEKHYCGYCNKDMLLREAVSCCYCDGLFHRKHFRVPKGAMETPTSCFKCKEKENVKASPFQNIAAGWKRKTSVSRKGIRVSMSKKSNESVDFFGENVKDNRILVIKKSKENKLSICKKAFLAKSKESKQFMAKKLSENKVSLARRSKKIIVSMAGQCRKNPVRLARKVKQNIFSLARKSKLNHTQAKEKVTNKRKRKTDQDKGHSISSKKAMPLKSDNFVNWSKKKRSVLFHSHWLNGLLWVSSPSNERGRTFREKNVFLQFQPTDDGSAQLMCCLCHGDYKTGDIFLSCESCRDWFHGEAFGLQLESVSNVAGFKCPHCRNRNVPVCPFTKNQTNGTVIIKKGYNAVSVPGDIQHYKRTRKFQNASCKYCLSSAPCKNHSKVIEVPSHCEDYIVLSNKTFSTRSSTVHLSGHEHANADSLVKRIYSK

Gene family

Gene family	subfamily
Transcription Factors Family	DDT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.120
SRP064423	SRR2545915	Juvenile tuber	31.320
SRP108465	SRR5643513	five period of Gastrodia elata	20.100
	SRR5643514	five period of Gastrodia elata	19.910
	SRR5643515	five period of Gastrodia elata	18.520
	SRR5643524	five period of Gastrodia elata	18.290
	SRR5643525	five period of Gastrodia elata	15.710
	SRR5643528	five period of Gastrodia elata	15.540
	SRR5643658	five period of Gastrodia elata	17.850
	SRR5643659	five period of Gastrodia elata	15.270
	SRR5643660	five period of Gastrodia elata	17.230
	SRR5643661	five period of Gastrodia elata	15.640
	SRR5643662	five period of Gastrodia elata	14.450
	SRR5643663	five period of Gastrodia elata	15.510
	SRR5643664	five period of Gastrodia elata	16.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.040
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.040
SRP279888	Gastro	Gastrodia elata tuber	17.01
	Juven	Juvenile tuber	34.12
	Mother_Gastro	Mother tuber of Gastrodia elata	20.59
	Mother_Juven	Mother tuber of Juvenile	31.07