Detail information of GWHGAAEX010181/evm.TU.scaffold_275.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743857979|ref|XP_010942245.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Elaeis guineensis] |
| Swissprot | tr|Q9CAA8|PP108_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At1g68930 |
| trEMBL | tr|J3L8T5|J3L8T5_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G10520.1} |
| TAIR | AT1G68930 | 0 | pentatricopeptide (PPR) repeat-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000270 | 447980 | 466572 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010181
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 72 | 100 | 0.024 |
| PF01535.19 | PPR | 103 | 132 | 2.30E-07 |
| PF01535.19 | PPR | 206 | 233 | 0.00026 |
| PF01535.19 | PPR | 236 | 266 | 0.0074 |
| PF13041.5 | PPR_2 | 334 | 382 | 8.10E-09 |
| PF01535.19 | PPR | 410 | 433 | 0.0048 |
| PF13041.5 | PPR_2 | 436 | 483 | 5.30E-09 |
| PF01535.19 | PPR | 510 | 535 | 0.00015 |
| PF01535.19 | PPR | 576 | 605 | 0.025 |
| PF14432.5 | DYW_deaminase | 609 | 732 | 9.90E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.960 |
| SRR2545915 | Juvenile tuber | 7.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.580 |
| SRR5643514 | five period of Gastrodia elata | 2.980 | |
| SRR5643515 | five period of Gastrodia elata | 2.750 | |
| SRR5643524 | five period of Gastrodia elata | 2.850 | |
| SRR5643525 | five period of Gastrodia elata | 0.610 | |
| SRR5643528 | five period of Gastrodia elata | 0.470 | |
| SRR5643658 | five period of Gastrodia elata | 0.690 | |
| SRR5643659 | five period of Gastrodia elata | 2.690 | |
| SRR5643660 | five period of Gastrodia elata | 3.790 | |
| SRR5643661 | five period of Gastrodia elata | 2.590 | |
| SRR5643662 | five period of Gastrodia elata | 2.760 | |
| SRR5643663 | five period of Gastrodia elata | 2.800 | |
| SRR5643664 | five period of Gastrodia elata | 3.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.620 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.25 |
| Juven | Juvenile tuber | 3.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.92 | |
| Mother_Juven | Mother tuber of Juvenile | 2.38 |