Detail information of GWHGAAEX010184/evm.TU.scaffold_276.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307154550|ref|YP_003889934.1|3.00E-41short-chain dehydrogenase/reductase SDR [Cyanothece sp. PCC 7822]
KOGKOG12054.00E-145Predicted dehydrogenase
nrgi|743815160|ref|XP_010930258.1|4.67E-163PREDICTED: dehydrogenase/reductase SDR family member 7 isoform X1 [Elaeis guineensis]
Swissprottr|P0DKC6|HSD1B_ARATH2.00E-2011-beta-hydroxysteroid dehydrogenase 1B
trEMBLtr|B8BJZ0|B8BJZ0_ORYSI2.00E-154Putative uncharacterized protein {ECO:0000313|EMBL:EEC67976.1}
TAIRAT3G033304.00E-145NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002694640864021-
Transcript Sequence

Network for GWHGAAEX010184

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00106.24adh_short442401.70E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016491Molecular Functionoxidoreductase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms64.560
SRR2545915Juvenile tuber76.030
SRP108465SRR5643513five period of Gastrodia elata41.890
SRR5643514five period of Gastrodia elata52.730
SRR5643515five period of Gastrodia elata36.610
SRR5643524five period of Gastrodia elata42.900
SRR5643525five period of Gastrodia elata71.720
SRR5643528five period of Gastrodia elata63.080
SRR5643658five period of Gastrodia elata72.940
SRR5643659five period of Gastrodia elata23.720
SRR5643660five period of Gastrodia elata26.240
SRR5643661five period of Gastrodia elata22.230
SRR5643662five period of Gastrodia elata17.710
SRR5643663five period of Gastrodia elata24.360
SRR5643664five period of Gastrodia elata17.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_133.600
SRR6049655Rhizomagastrodiae_C368-T10_good_137.470
SRR6049656Rhizomagastrodiae_C368-T07_good_141.740
SRR6049657Rhizomagastrodiae_C368-T07_good_144.300
SRR6049658Rhizomagastrodiae_C368-T04_good_127.340
SRR6049659Rhizomagastrodiae_C368-T04_good_131.940
SRR6049660Rhizomagastrodiae_C368-T01_good_133.640
SRR6049661Rhizomagastrodiae_C368-T04_good_129.250
SRR6049662Rhizomagastrodiae_C368-T01_good_132.760
SRR6049663Rhizomagastrodiae_C368-T01_good_134.870
SRR6049664Rhizomagastrodiae_C368-T10_good_146.710
SRR6049665Rhizomagastrodiae_C368-T10_good_146.710
SRP279888GastroGastrodia elata tuber 30.66
JuvenJuvenile tuber37.01
Mother_GastroMother tuber of Gastrodia elata 28.31
Mother_JuvenMother tuber of Juvenile 37.58