Detail information of GWHGAAEX010188/evm.TU.scaffold_276.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|109900613|ref|YP_663868.1|8.00E-1150S ribosomal protein L34 [Pseudoalteromonas atlantica T6c]
KOGKOG46122.00E-06Mitochondrial ribosomal protein L34
nrgi|743797426|ref|XP_010924979.1|1.09E-47PREDICTED: uncharacterized protein LOC105047652 [Elaeis guineensis]
trEMBLtr|M0TKA4|M0TKA4_MUSAM2.00E-46Ribosomal protein L34 {ECO:0000256|RuleBase:RU000566}
TAIRYDR115W2.00E-06Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000269322163362496+
Transcript Sequence

Network for GWHGAAEX010188

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00468.16Ribosomal_L341051467.10E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02914RP-L34, MRPL34, rpmH Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms73.240
SRR2545915Juvenile tuber88.490
SRP108465SRR5643513five period of Gastrodia elata40.100
SRR5643514five period of Gastrodia elata52.090
SRR5643515five period of Gastrodia elata38.940
SRR5643524five period of Gastrodia elata46.260
SRR5643525five period of Gastrodia elata56.300
SRR5643528five period of Gastrodia elata50.000
SRR5643658five period of Gastrodia elata49.050
SRR5643659five period of Gastrodia elata55.550
SRR5643660five period of Gastrodia elata56.420
SRR5643661five period of Gastrodia elata57.920
SRR5643662five period of Gastrodia elata64.350
SRR5643663five period of Gastrodia elata71.980
SRR5643664five period of Gastrodia elata73.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.190
SRR6049655Rhizomagastrodiae_C368-T10_good_153.040
SRR6049656Rhizomagastrodiae_C368-T07_good_139.990
SRR6049657Rhizomagastrodiae_C368-T07_good_131.550
SRR6049658Rhizomagastrodiae_C368-T04_good_134.940
SRR6049659Rhizomagastrodiae_C368-T04_good_132.170
SRR6049660Rhizomagastrodiae_C368-T01_good_136.080
SRR6049661Rhizomagastrodiae_C368-T04_good_133.170
SRR6049662Rhizomagastrodiae_C368-T01_good_146.410
SRR6049663Rhizomagastrodiae_C368-T01_good_141.700
SRR6049664Rhizomagastrodiae_C368-T10_good_148.940
SRR6049665Rhizomagastrodiae_C368-T10_good_148.940
SRP279888GastroGastrodia elata tuber 87.13
JuvenJuvenile tuber38.66
Mother_GastroMother tuber of Gastrodia elata 16.09
Mother_JuvenMother tuber of Juvenile 15.00