Gene detail

Detail information of GWHGAAEX010189/evm.TU.scaffold_276.8

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1040	8.00E-37	Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit)
nr	gi\|743797442\|ref\|XP_010924983.1\|	7.17E-60	PREDICTED: zinc finger CCCH domain-containing protein 7 [Elaeis guineensis]
Swissprot	tr\|Q657B3\|C3H7_ORYSJ	1.00E-48	Zinc finger CCCH domain-containing protein 7
trEMBL	tr\|M7Z921\|M7Z921_TRIUA	8.00E-60	Zinc finger CCCH domain-containing protein 7 {ECO:0000313\|EMBL:EMS56091.1}
TAIR	AT5G56930	8.00E-37	CCCH-type zinc finger family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000269	368685	397657	-

Transcript Sequence
>GWHTAAEX010189 CGAACATTAGGGGTTATCCACAAGACTTGAAGTAAAATGACGTTCTAGCACAAACATTCTAGAGGCAGCTTTCAGCGATCAAAATCTGTCACTCGGTTGGAGAAAATCTTTTTTTGGAAGATTGGTTCCACGGAAGAATCGTGAAATTTTTGGACGAAATGCTTCACAATTCTTTGATGATGCTTATCTACAATATATTGCCAATTTTATCTCATATATATAATGGATATTATAATTAGAGGTTTTTTATAAATTTTTGTGTATTATATAGTTCAAACTTGATTTTGAAAATTTGGTTCTACAGATAGATCGTCCCGGCAATGTTCGACAATTGCCACTATGAAATCAGTTCTCCAGATAAAAGAGTTGATCACGAAACCCTAACAATTCTGCCGAGCAAAATTTTAAACTTGTCATCCTGCGCCTCGCCTCGATTCCACCTTGATAGTTCATCGTACCGCTCTCTTGTTCGCGTACTCTCACTTTGCCTCGATCATTCTCCTGTTCTTTCTCCGCCAAAGCTTGAGGCAAGCCTACCCGTGAAAGGTCCGACTTCTAGTTATGGAAGTGGCGCGATTCATCTAAAGCCGGAGGCCGTCTATGTGAAAGATCTAAGATCAAGTCTCAGAACAGGAGAGATTCATCCAGAACATGAGGCAGGCGCAAACACTGACGGGGGAACCTCAGTCAACAGGCAAGAAGGTGATCCTCGCACTGATAATGGGGCACAGGAGGCAGTTTTGGCTACCACTGCTGGGTTGGTGGATCTTTTTCTTCACGATTTTGGTGAGAGGGAGAACGAATCGTGCGTTAACAACCAAGAGCTCAGCAGAGTCATGCTGGACTGCTGTAGGTTAATTAATAAGCCTAATGAGGAGCAAAACAGGGAAGCACATACAGGGAATGAACAAGGATTTGCTGAGAAGACCATCCATAATGAATTGGCGATTACAAAATCCTTATTTCATGGGGCAGAGGAAGAGGTTTCTCATCTTGCAGAGGGCTCTGAGGTTGCTAAGGGTGAGGATAGAGTTCCTAACTATTTGAATGAAGCAGAAGGTTTGAGAAAATCATATGGGGATATTGGTGATCTCAGTGAACCAGTGCTGGATATTGATTATGAGAAGATCACTTCAATTGAAACACAAGATAGGAACTCTAAAGAAGAGGAAGAAATTCTGGAGGTAAGAAAAAAAAATGCAAAAGTTTTTTCTACTCCTACATTGGATTGTTCAGGATTGAGGAACTTGAAGCAAGACCAACCTTGCCCCTTTGCTCTTCAAATTGATGAAGCAGAGATGGAAGAAGGTGAAATTTCTGATGACATGCAGGATTTGGAAGATCTGGTTGATATTAGTAATAATGAGAAAGTTTCAGAGGATGAAAGGGAAAAACTGCCAAAGGGCGACATCCAACAGGTTGCTTCTACAACAATATTTAGTCATAGAAAGGAAGTTGTTGAGGTTGGAGATGGTTTATCGCACACATCGGAACAGGATTCACCGAATAAAGCAACCCAAATCAAACTAAAGGTTATGAGTGCTAAGGAAAAGAGGAAAATTAAACCTTTGACTGAGGAAAGGAAAACAAAGAAAAAGATTGCAAAGAAAAGGAAAAGAGCACAGAAGAACAGAGAACAAGGTGTTAAGAAATTGAAGTTACATGCTATTAATAAGCCAAAAGAAGTAAAATATTGCAATTTTTACTTGATGGGAAGGTGCCAGCAGGGAAACTTGTGCAAATTTTCTCATGATACCACTCCTTTAACAAAATCCATGCCTTGCAAACATTTTGCTTGTAATTCATGCTTGAAAGGGGAGGATTGCCCATATGATCACGAACTTTCAAAGTATCCCTGCCACAACTATGTTTCCACAGGCACTTGTAACCGAGGAGATAGATGCAAGTTTTCTCATAAGATACCATCCGCAGATGCTGCTTCTCAATTAACCGTCAGTAAGATGGATCCACATTTGACTTCAGAACAGCTGAAGTTAAAAAACCTGCTTGCTGGGACTCATGCTGTTTCTCCAGTTGACAGAGGTTTATCTGAAGGTGAAAATAAAGGAACACTGACATTGAAGCATAAACCATTGCAAAAAGCTAACCAGGCACCAAAAGGTATACGTTTCATTTCATTTGGGACTGTAGAGAAAAACCTAACCAACAAAGAAGGCTTACCTGTGAACAAGTCTTGTCAAATTGGAGCATACAATCATCATAAGCAAGATAATTTACTGACGCCCACTCTCCTCGGTGCCTTAGCATGCCCTTGGAATTCTTTACCTCCCAAAAATTCTATGGCGTCCAGTGGATTAGTTGGTGATTCTTCTTCAAACAGATTGTGTTCAAAGATTTCTGGAAACGTAACCAAAGGATCATCTATTGTAACTTCTCCCAAAATACATATCAATAATGAATTTTCAGAAGCTACAAAAATTTTAGAAGAGTTTTTGTTTTGTGTTACAGATTAGAAGCAACATGATGAAATTTTGTACTTTTATTTTCTATTTGCAATTGAAATTACAAACAAAAATTGAATCACAACTTTGCGTAGCAGGCTCACGATAGTAAACTATCATTCCAGTGCTATCTAGCCAACCACATTAAATTCTATCTGAATAATCATGTACCCCGTTATGTTTGCAATTTGATCCCTACACTAGGAATGACAAGTTGCAAGCAATAACATTTTCAGTTTCGTTTTTGTAGTGGATCTGAAAGTTCATAAGAGAGCAAATAATGTCTATTATGTCTAACCTTTATTTTGAGCTACCAATGTTGA

Network for GWHGAAEX010189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.23	zf-CCCH	512	532	1.80E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	55.140
SRP064423	SRR2545915	Juvenile tuber	45.270
SRP108465	SRR5643513	five period of Gastrodia elata	23.720
	SRR5643514	five period of Gastrodia elata	27.630
	SRR5643515	five period of Gastrodia elata	24.110
	SRR5643524	five period of Gastrodia elata	24.000
	SRR5643525	five period of Gastrodia elata	31.780
	SRR5643528	five period of Gastrodia elata	22.500
	SRR5643658	five period of Gastrodia elata	36.290
	SRR5643659	five period of Gastrodia elata	25.820
	SRR5643660	five period of Gastrodia elata	28.910
	SRR5643661	five period of Gastrodia elata	27.570
	SRR5643662	five period of Gastrodia elata	23.210
	SRR5643663	five period of Gastrodia elata	29.590
	SRR5643664	five period of Gastrodia elata	26.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.750
SRP279888	Gastro	Gastrodia elata tuber	32.86
	Juven	Juvenile tuber	17.61
	Mother_Gastro	Mother tuber of Gastrodia elata	26.49
	Mother_Juven	Mother tuber of Juvenile	17.04