Detail information of GWHGAAEX010192/evm.TU.scaffold_277.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672156258|ref|XP_008797821.1|7.89E-95PREDICTED: protein enabled-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q9M9G6|CTF64_ARATH3.00E-10Cleavage stimulating factor 64 {ECO:0000303|PubMed:12379796}
trEMBLtr|M0SP10|M0SP10_MUSAM5.00E-93Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P14950_001}
TAIRAT1G738404.00E-27hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002763170281507+
Transcript Sequence

Network for GWHGAAEX010192

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14327.5CSTF2_hinge6731.10E-16
PF14304.5CSTF_C3613881.40E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0031124Biological ProcessmRNA 3'-end processing

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.130
SRR2545915Juvenile tuber28.120
SRP108465SRR5643513five period of Gastrodia elata27.570
SRR5643514five period of Gastrodia elata31.710
SRR5643515five period of Gastrodia elata29.500
SRR5643524five period of Gastrodia elata29.750
SRR5643525five period of Gastrodia elata34.490
SRR5643528five period of Gastrodia elata39.470
SRR5643658five period of Gastrodia elata34.460
SRR5643659five period of Gastrodia elata28.850
SRR5643660five period of Gastrodia elata33.220
SRR5643661five period of Gastrodia elata31.550
SRR5643662five period of Gastrodia elata33.500
SRR5643663five period of Gastrodia elata28.050
SRR5643664five period of Gastrodia elata32.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_131.580
SRR6049655Rhizomagastrodiae_C368-T10_good_149.370
SRR6049656Rhizomagastrodiae_C368-T07_good_130.650
SRR6049657Rhizomagastrodiae_C368-T07_good_134.130
SRR6049658Rhizomagastrodiae_C368-T04_good_133.730
SRR6049659Rhizomagastrodiae_C368-T04_good_137.090
SRR6049660Rhizomagastrodiae_C368-T01_good_135.610
SRR6049661Rhizomagastrodiae_C368-T04_good_131.350
SRR6049662Rhizomagastrodiae_C368-T01_good_129.770
SRR6049663Rhizomagastrodiae_C368-T01_good_132.740
SRR6049664Rhizomagastrodiae_C368-T10_good_133.240
SRR6049665Rhizomagastrodiae_C368-T10_good_133.240
SRP279888GastroGastrodia elata tuber 32.46
JuvenJuvenile tuber34.23
Mother_GastroMother tuber of Gastrodia elata 36.77
Mother_JuvenMother tuber of Juvenile 34.84