Gene detail

Detail information of GWHGAAEX010195/evm.TU.scaffold_277.6

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557694900\|ref\|YP_008797954.1\|	6.00E-08	26S proteasome regulatory subunit N11-like protein [Candidatus Caldiarchaeum subterraneum]
KOG	KOG2880	2.00E-148	SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain
nr	gi\|672173879\|ref\|XP_008807080.1\|	0	PREDICTED: AMSH-like ubiquitin thioesterase 1 [Phoenix dactylifera]
Swissprot	tr\|Q8VYB5\|AMSH1_ARATH	5.00E-153	AMSH-like ubiquitin thioesterase 1
trEMBL	tr\|M0RJQ8\|M0RJQ8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P19830_001}
TAIR	AT1G48790	2.00E-148	associated molecule with the SH3 domain of STAM 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000276	196474	240793	+

Transcript Sequence
>GWHTAAEX010195 ATTTATTGTTGCATCGTGCACATTATATTATTGTTACCATTGATGATCATGCACATAATTTATGTTTCATGTATTTTTGTCCTTTCTTGGGAAATTTTGAGTATTCCATACCTTGCATGAAATGGTTTGTTGCAAATAGGAAGTTAGTATATTGGAACATTTAAACTTGAAATGTATCTGTTCATTTAATGTTGAAAATTTCACTCTTTTCCTCAAAATTGTTCTTTTATCTAAGTTGGGGTGTTTTTTGTAATAGCTTTTAGATGCTTTTGACCAATTCAATGGCTTTAATTTGTAGCACATCTGTAACTACCCTGACAAAGATGCCTCACTTTATCTAATATGAAACAATTCTGCATTGTTTCCCTTGCAATCTCTTTGTGCTCACTTGAGAAGTTGCCTTCTGGACTTTAAAAAAAGGCTGATATCTATCGTGAGGAAAACAAAATAATTGATCTGTATGTTATGCTGCTGCGGTTTTCAAGTTTGATCACTGAAACTATTCCATATCATCCAGATTATCACGGGTCTCTTCAAGGTGAACGGTCAATCTTTAAGAAGAAGTTATTTCATGTTTTGGATGAGCTAGAGGCACTTAAGCCAGAGGTACAGCAGTGCCTTGAAGAGTTGAACCAGAATTCTAGGAGTCAAGTTAGTAGATGGAATCATTATCATCAAAGCGCTTCCGTTAACGACACATTGGATTGGCCTTCTATTAGAAAACAAACATTTAGAAGTGAGGGAAAACAGTTGCAGGCGCTTAGAGTTTTTGGATCAAAAGAAGTCTCTAGGTTTCCATTTAGTCAACCAAATGTTCCATTACAGTTCAAGCCCATTGGGGAGCACATTTATAAATTATCTCTTACTGCTCTGCGGCCCAAGGAAGAGACCTTATCGAGGCACTCTATTCTAGGTCCCAATGGTCTTACTGGATACCGTCAGCCACCAAATATTAGTCAACGGGTACAATATCCAAGCAATATAGACTCGTCTCTGATTGAAATCCCAAGCTTGCGTCAGCCTAAATTAGATGATCCCGTTATGAAAGATAATGGAACTTCTTGCCAAGATAACACTTTTTTAGCGGAAGTCCTCTCCTTGCATGATGGTGGAGCATTGATTTGTGCCGAACAACCATCTTCTACAATTAGCACTGATTCTACAGAAGTTCCTGCTAAAGTGAATCTTCTTAGAGATTTATCGCCCCCGCCTGTGCGCACAGAAGTAGAAGAGTTGGTTTCAGTGACATCACAGCTATCTAATTCACTCGAACAAACATCTTTATCAACAAAAGAGCTGGTGTGCTCTGAATCTCCTCTAGAAGTACACATATCAATTTTATTGATGGAGAGCTTTCTAAGTGTGGCCAAATCAAATACTAACAGGCAAATAGAAACATGTGGAATCATTGCTGGTTCCCTTAAAAACAAAAAATTTTATGTTACTGCTCTTATCATTCCAAAACAGGAGGGGACGACTGATTCATGCCAAGCAACAAATGAAGAAGAAATATTTGATTACCAGGATAAACATTCACTCTTCCCCCTTGGTTGGATTCATACACATCCCACTCAGTCTTGTTTCATGTCTTCAATAGATGTACACACACACTATTCCTATCAGGTTATGCTACCAGAAGCGATTGCAATTGTTATGGCCCCCACTGACAGTTCCAGAAAACACGGCATTTTTAGGCTGACAACTCCTGGGGGAATGTCGGTCATCAGGAAATGCGATCAGCGTGGCTTTCATCCCCATCCATCTCCATCCGATGGCAGTCCTATTTATGACCTTTGCTCTGACGTTTATATGAATCCGTCCCTGAAATTTGACGTGGTTGATCTTCGATGA

Network for GWHGAAEX010195

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01398.20	JAB	284	390	1.10E-18

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	pathway	mapID
K11866	STAMBP, AMSH	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.270
SRP064423	SRR2545915	Juvenile tuber	13.470
SRP108465	SRR5643513	five period of Gastrodia elata	6.230
	SRR5643514	five period of Gastrodia elata	6.710
	SRR5643515	five period of Gastrodia elata	6.210
	SRR5643524	five period of Gastrodia elata	6.280
	SRR5643525	five period of Gastrodia elata	9.090
	SRR5643528	five period of Gastrodia elata	7.890
	SRR5643658	five period of Gastrodia elata	8.290
	SRR5643659	five period of Gastrodia elata	6.760
	SRR5643660	five period of Gastrodia elata	6.700
	SRR5643661	five period of Gastrodia elata	6.550
	SRR5643662	five period of Gastrodia elata	7.720
	SRR5643663	five period of Gastrodia elata	7.210
	SRR5643664	five period of Gastrodia elata	6.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.600
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.670
SRP279888	Gastro	Gastrodia elata tuber	8.60
	Juven	Juvenile tuber	6.64
	Mother_Gastro	Mother tuber of Gastrodia elata	10.07
	Mother_Juven	Mother tuber of Juvenile	7.85