Detail information of GWHGAAEX010199/evm.TU.scaffold_277.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|434391751|ref|YP_007126698.1|3.00E-62LSU ribosomal protein L13P [Gloeocapsa sp. PCC 7428]
KOGKOG32032.00E-105Mitochondrial/chloroplast ribosomal protein L13
nrgi|672184451|ref|XP_008812536.1|5.21E-122PREDICTED: 50S ribosomal protein L13, chloroplastic [Phoenix dactylifera]
Swissprottr|Q9SYL9|RK13_ARATH7.00E-10650S ribosomal protein L13, chloroplastic (Precursor)
trEMBLtr|M0TW58|M0TW58_MUSAM5.00E-114Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P00010_001}
TAIRAT1G786302.00E-105Ribosomal protein L13 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000276320087348094+
Transcript Sequence

Network for GWHGAAEX010199

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00572.17Ribosomal_L131122349.30E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02871RP-L13, MRPL13, rplM Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.270
SRR2545915Juvenile tuber17.910
SRP108465SRR5643513five period of Gastrodia elata12.090
SRR5643514five period of Gastrodia elata9.520
SRR5643515five period of Gastrodia elata11.570
SRR5643524five period of Gastrodia elata8.420
SRR5643525five period of Gastrodia elata9.270
SRR5643528five period of Gastrodia elata12.020
SRR5643658five period of Gastrodia elata11.250
SRR5643659five period of Gastrodia elata24.860
SRR5643660five period of Gastrodia elata22.570
SRR5643661five period of Gastrodia elata25.240
SRR5643662five period of Gastrodia elata32.490
SRR5643663five period of Gastrodia elata28.490
SRR5643664five period of Gastrodia elata27.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.540
SRR6049655Rhizomagastrodiae_C368-T10_good_111.190
SRR6049656Rhizomagastrodiae_C368-T07_good_112.540
SRR6049657Rhizomagastrodiae_C368-T07_good_114.800
SRR6049658Rhizomagastrodiae_C368-T04_good_116.680
SRR6049659Rhizomagastrodiae_C368-T04_good_117.620
SRR6049660Rhizomagastrodiae_C368-T01_good_114.960
SRR6049661Rhizomagastrodiae_C368-T04_good_118.750
SRR6049662Rhizomagastrodiae_C368-T01_good_113.840
SRR6049663Rhizomagastrodiae_C368-T01_good_117.850
SRR6049664Rhizomagastrodiae_C368-T10_good_114.800
SRR6049665Rhizomagastrodiae_C368-T10_good_114.800
SRP279888GastroGastrodia elata tuber 43.44
JuvenJuvenile tuber9.92
Mother_GastroMother tuber of Gastrodia elata 12.72
Mother_JuvenMother tuber of Juvenile 8.97