Detail information of GWHGAAEX010200/evm.TU.scaffold_277.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|397689769|ref|YP_006527023.1| | 6.00E-27 | cation transporter [Melioribacter roseus P3M-2] |
| KOG | KOG1485 | 0 | Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) |
| nr | gi|743772138|ref|XP_010916369.1| | 0 | PREDICTED: metal tolerance protein 7-like [Elaeis guineensis] |
| Swissprot | tr|Q9LDU0|MTP7_ORYSJ | 0 | Metal tolerance protein 7 |
| trEMBL | tr|M5WUY4|M5WUY4_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ13158.1} |
| TAIR | AT1G16310 | 0 | Cation efflux family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000276 | 348500 | 352364 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010200
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01545.20 | Cation_efflux | 120 | 309 | 1.20E-33 |
| PF16916.4 | ZT_dimer | 315 | 389 | 8.10E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006812 | Biological Process | cation transport |
| GO:0008324 | Molecular Function | cation transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.880 |
| SRR2545915 | Juvenile tuber | 36.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 88.890 |
| SRR5643514 | five period of Gastrodia elata | 129.400 | |
| SRR5643515 | five period of Gastrodia elata | 99.780 | |
| SRR5643524 | five period of Gastrodia elata | 120.650 | |
| SRR5643525 | five period of Gastrodia elata | 56.170 | |
| SRR5643528 | five period of Gastrodia elata | 50.590 | |
| SRR5643658 | five period of Gastrodia elata | 46.490 | |
| SRR5643659 | five period of Gastrodia elata | 33.460 | |
| SRR5643660 | five period of Gastrodia elata | 36.850 | |
| SRR5643661 | five period of Gastrodia elata | 38.840 | |
| SRR5643662 | five period of Gastrodia elata | 33.520 | |
| SRR5643663 | five period of Gastrodia elata | 33.490 | |
| SRR5643664 | five period of Gastrodia elata | 36.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 83.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 55.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 73.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 84.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 78.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 94.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 68.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 62.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 88.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 93.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 90.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 90.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.36 |
| Juven | Juvenile tuber | 86.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 145.70 | |
| Mother_Juven | Mother tuber of Juvenile | 136.52 |