Detail information of GWHGAAEX010213/evm.TU.scaffold_2782.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|566153726|ref|XP_006370118.1| | 2.78E-77 | hypothetical protein POPTR_0001s39660g [Populus trichocarpa] |
| Swissprot | tr|P43309|PPO_MALDO | 7.00E-73 | Polyphenol oxidase, chloroplastic (Precursor) |
| trEMBL | tr|U5GXC6|U5GXC6_POPTR | 1.00E-77 | Uncharacterized protein {ECO:0000313|EMBL:ERP66687.1} |
| TAIR | HS4507753_1 | 2.00E-06 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00002774 | 390 | 2095 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010213
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00264.19 | Tyrosinase | 2 | 163 | 1.20E-25 |
| PF12142.7 | PPO1_DWL | 170 | 217 | 5.80E-17 |
| PF12143.7 | PPO1_KFDV | 248 | 347 | 7.30E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00422 | E1.10.3.1 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Tyrosine metabolism | map00350 | ||
| Isoquinoline alkaloid biosynthesis | map00950 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0004097 | Molecular Function | catechol oxidase activity |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.750 |
| SRR2545915 | Juvenile tuber | 4.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.990 |
| SRR5643514 | five period of Gastrodia elata | 30.020 | |
| SRR5643515 | five period of Gastrodia elata | 19.670 | |
| SRR5643524 | five period of Gastrodia elata | 28.200 | |
| SRR5643525 | five period of Gastrodia elata | 3.270 | |
| SRR5643528 | five period of Gastrodia elata | 4.520 | |
| SRR5643658 | five period of Gastrodia elata | 3.760 | |
| SRR5643659 | five period of Gastrodia elata | 4.710 | |
| SRR5643660 | five period of Gastrodia elata | 3.610 | |
| SRR5643661 | five period of Gastrodia elata | 5.440 | |
| SRR5643662 | five period of Gastrodia elata | 8.730 | |
| SRR5643663 | five period of Gastrodia elata | 6.920 | |
| SRR5643664 | five period of Gastrodia elata | 9.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.05 |
| Juven | Juvenile tuber | 6.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.15 | |
| Mother_Juven | Mother tuber of Juvenile | 11.57 |