Gene detail

Detail information of GWHGAAEX010215/evm.TU.scaffold_279.2

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2023	Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily)
nr	gi\|743762955\|ref\|XP_010910681.1\|	PREDICTED: transportin-1-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|B9FDR3\|TNPO1_ORYSJ	Transportin-1
trEMBL	tr\|M0TW19\|M0TW19_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P34170_001}
TAIR	AT2G16950	transportin 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000284	43299	138143	+

Transcript Sequence
>GWHTAAEX010215 GTTGTGTTCATTTTCTCTATAAAATGTCCACGGTTTTATGTTCATATTCACGACCTAAAAGAATCTGTCAACCCCACCCGAACCCGAAATCTCTTTTTATCTGTTCCGACTTCCGGATTTCTTTTATTAATAATTCTTCGGAAGAGGCGTCGGAGGATGACGGCGCCGGCGGTGTCGATGTGGCAGCCACAGGAGGAAGGGCTCCGTGAGATATGCGGCTTGCTGGAGAGGCAGATCTCACCGAATTCCGATCAACATCTCATATGGCAGCAGCTTCAGAGCTACAGCCAAGCCGCTGATTTTAACTGCTATCTCGCTTTCATCCTCGCAAGGGCTGAGGGTAAACCAGCAGATATACGACAGGCTGCTGGCCTGCTTTTGAAGAATAATTTAAGAAACAGTTTCAGATCCATAAATCCTTCACATCAGCAATACATCAAGTCACAGTTATTATCATGTTTAGGGGCTGCAGATAAGACGATCAGATCTACATCTGGAACTGTTATAAGTGTCATAGTGCAATCTGAAGGAATTTCTGGTTGGCCAGAGTTGCTGCAAGCTCTTGTTGATTGCTTGGATAGTAATGACTTAAATCATATGGAGGGTGCTTTAGATGCTATCTATAAGATCTGTGAAGATTCTCCGAAGGTGCTTGATGTGGATGTTCCTGGATTGACTGAACGACCTATTAACATTTTCATGCCAAGGTTATTGCAGTTTTTTCAATCTCCACATTCAACACTTAGAAGATTCTCTTTGGGTTCCATTAACCAGTTTGTTGTAAGAATGCCTAAGGCTTTGCTGCTCTCTATGGATCAATATTTACAGGGTTTATTTATTCTTTCACGAGATGCTGCTGCCGATGTTAGAAAGCTGGTTTGCTCTGCATTTGTTCAGTTAATAGAAGTTCGAAATGCATTTTTGGAGCCGTATTTGAGGAGTGTGATTGAATACATGTTGCTAGCTAATGAAGACTCTGATGATGAAGTTGCTCTTGAGGCATGTGAATTTTGGTCTGCATATTGCGAAGCTAATTTACCACCCGAAGGCTTAAGAGAATTTTTGCCACGTTTGATTTCGGTTTTACTATCAAATATGGTGTATGCTGATGATGATGAGTCACTTGATGATGCCGAGGATGATGAGTCCATCCCTGACAGAGATCAGGATTTGAGGCCTCGTTTTCATTCATCAAGACTTCATGGATGTGATAGTGGAGAAGATCCTGATGATAACATAGTCAATGTTTGGAATCTACGGAAGTGCAGTGCAGCTGGTTTAGATGTTCTTTCAAATTTATTTGGCAATGAGTTACTTCCAGCTCTTATGCCTTTGATTCAGCAAAGGTTGGCGACATCTCATATGGAGTGGAAAGAGAGGGAGGCGGCGGTGTTGGCCATTGGTGCTATTGCAGAGGGATGTTTTAGTGGGCTCTACCCCCTTCTACCTGAGATTCTTGCATTCCTTTTACCGCTGCTGGAGGATAAGTTTCCCCTAATCCGGAGTATCACCTGCTGGACAATATCACGTTTTAGTAACTTTGTTGTCCAGAGCATTGCTCAACAAGAAAAAGGCCGTGAACGGTTCTACGAAGTTCTAATGGGTCTTCTTCGTAGAATATTGGATTCTAATAAGAGAGTGCAGGAGGCAGCATGTTCTGCTCTTGCGACCCTTGAAGAGGAGGCAGCTGAAGAACTGGTTCCACATGTGGAGGTCATTTTACAACACCTTTTATGTGCGTTTGGAAAGTATCAGCGGCACAACCTGAGAATTGTGTATGATGCTCTTGGTACTCTAGCAGATGCCGTTGGAGGAGAGCTGAATCAGCCAAACTATCTTGACATCCTTATGCCACCATTAATTACAAAGTGGCAACAGCTATCAAACTCAGACAAAGATCTCTTTCCATTACTGGAGTGCTTTACTTCTATAGCACAGGCTCTAGGACCAGGCTTTGCCAGATTTGCTGAACCTGTATTCCTACGGTGCATTAGTCTAATCCAGATCCAGCTGTTGGCAAAGGTTGATCATGTTGCAGCAGGCGCTCAATATGATAAAGAGTTTATTGTTTGCTCCTTGGATTTATTATCAGGAATTTCTGAAGGCCTTGGAAGTGGGATCGAGAGTCTGGTTGCTCAAAGTAATTTAAGGGATTTACTAATACAGTGTTGCATGGATGATGCTACTGATATTCGACAAAGTGCTTATGCACTTCTTGGGGACCTTGCACGGGTCTGTCCGGGGCATCTACATGCTCGTCTCTTGGATTTTCTCAACTTTGCATCTGAGCAACTGAACGTCTCTCAGGTTCAAGAGGCTGTATCTGTAGCAAATAATGCTTGTTGGGCACTTGGGGAATTAGCTATTAAGGTTCATCAGGAAATATCTCCCGTGGTTATTAAAGTCACTTCATATCTTGTTCTTATCCTTCAAAATCCAGAGGGTTTGAGCAAGTCACTTCTAGAGAACAGTGCCATTACGCTTGGCAGACTAGGATGGGTATGCCCGGAACTTGTAGCGCCGCATATGGAGCATTTCATGCAGTCATGGTGTGCGGCTTTATGCATGATACGGGATGATTTTGAAAAGGAAGATGCATTCAAAGGTCTTTGTGCAATGGTTAGAACAAATCCCTCTGGCGCAATGAACTCTTTAGATTACATGTGCCGGGCTATTGCTAGTTGGCATGAAATAAGGAGCAAAGATTTGATCGCGGAAGTCTCCCAAGTTGTAAATGGATATAAACAGATGCTTGGGAGCGGAGCGTGGGAGCAGTTCCTTGTCAAATTAGAGCCTGCTGTGGCACAGAGGCTCGCCAGATACCAAGTGTAAAGAAAGAAGAGGTGATTCCTGCATTAATGCCATTTTGTAGTGGTTCGGAAAAGAAGCTGCCGATTTTAAGGGAAGCATTGCCTGTGCCGTGGCTTTGTCGCCGGTGCTCAATGCTGGAAGATTAGCATTCCCTGTGATGTTCTTCTCAGCATTGTGATCATTTATTTGTTCAAGGCCTCGGCAGATAACACAATCTGTCCTATAGATGATGAATTGCTTCCCTATTGTATTGGTTGTTGCTTGCTCGTCTTGTATGTCTCGGTGGGGTGTTTTTGCTTGTTTTCCCCTTTATTGATTTTTTTTTTTTTTTTT

Network for GWHGAAEX010215

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.18	IBN_N	37	103	2.70E-12
PF13513.5	HEAT_EZ	405	458	3.00E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport
GO:0008536	Molecular Function	Ran GTPase binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.870
SRP064423	SRR2545915	Juvenile tuber	33.110
SRP108465	SRR5643513	five period of Gastrodia elata	36.260
	SRR5643514	five period of Gastrodia elata	40.000
	SRR5643515	five period of Gastrodia elata	36.230
	SRR5643524	five period of Gastrodia elata	37.270
	SRR5643525	five period of Gastrodia elata	52.700
	SRR5643528	five period of Gastrodia elata	43.590
	SRR5643658	five period of Gastrodia elata	52.300
	SRR5643659	five period of Gastrodia elata	42.580
	SRR5643660	five period of Gastrodia elata	41.020
	SRR5643661	five period of Gastrodia elata	40.360
	SRR5643662	five period of Gastrodia elata	40.280
	SRR5643663	five period of Gastrodia elata	39.820
	SRR5643664	five period of Gastrodia elata	42.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	39.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.320
SRP279888	Gastro	Gastrodia elata tuber	49.13
	Juven	Juvenile tuber	54.58
	Mother_Gastro	Mother tuber of Gastrodia elata	66.04
	Mother_Juven	Mother tuber of Juvenile	63.57