Detail information of GWHGAAEX010218/evm.TU.scaffold_28.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|296131980|ref|YP_003639227.1| | 5.00E-125 | heavy metal translocating P-type ATPase [Thermincola potens JR] |
| KOG | KOG0207 | 0 | Cation transport ATPase |
| nr | gi|672156880|ref|XP_008798128.1| | 0 | PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Phoenix dactylifera] |
| Swissprot | tr|Q9SZW4|HMA2_ARATH | 0 | Cadmium/zinc-transporting ATPase HMA2 |
| trEMBL | tr|M0T0L9|M0T0L9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P21940_001} |
| TAIR | AT4G30110 | 0 | heavy metal atpase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000027 | 58422 | 83015 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010218
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00122.19 | E1-E2_ATPase | 209 | 385 | 5.20E-46 |
| PF00702.25 | Hydrolase | 403 | 620 | 1.20E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030001 | Biological Process | metal ion transport |
| GO:0006812 | Biological Process | cation transport |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0019829 | Molecular Function | cation-transporting ATPase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.620 |
| SRR2545915 | Juvenile tuber | 4.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.350 |
| SRR5643514 | five period of Gastrodia elata | 37.490 | |
| SRR5643515 | five period of Gastrodia elata | 18.910 | |
| SRR5643524 | five period of Gastrodia elata | 25.720 | |
| SRR5643525 | five period of Gastrodia elata | 12.430 | |
| SRR5643528 | five period of Gastrodia elata | 6.530 | |
| SRR5643658 | five period of Gastrodia elata | 12.320 | |
| SRR5643659 | five period of Gastrodia elata | 4.770 | |
| SRR5643660 | five period of Gastrodia elata | 5.300 | |
| SRR5643661 | five period of Gastrodia elata | 4.350 | |
| SRR5643662 | five period of Gastrodia elata | 6.690 | |
| SRR5643663 | five period of Gastrodia elata | 5.300 | |
| SRR5643664 | five period of Gastrodia elata | 6.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 73.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 52.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 38.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 61.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 81.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 81.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.53 |
| Juven | Juvenile tuber | 25.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.37 | |
| Mother_Juven | Mother tuber of Juvenile | 14.22 |