Detail information of GWHGAAEX010221/evm.TU.scaffold_28.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428202903|ref|YP_007081492.1| | 2.00E-37 | 30S ribosomal protein S12 [Pleurocapsa sp. PCC 7327] |
| KOG | KOG1750 | 8.00E-40 | Mitochondrial/chloroplast ribosomal protein S12 |
| nr | gi|11466674|ref|NP_039270.1| | 7.42E-39 | ribosomal protein S12, partial (chloroplast) [Marchantia polymorpha] |
| Swissprot | tr|P06368|RR12_MARPO | 7.00E-41 | 30S ribosomal protein S12, chloroplastic |
| trEMBL | tr|L7TAK7|L7TAK7_QUERU | 4.00E-39 | Ribosomal protein S12 {ECO:0000313|EMBL:AGC31294.1} |
| TAIR | ATCH002 | 8.00E-40 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000027 | 360936 | 374968 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010221
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00164.24 | Ribosom_S12_S23 | 1 | 71 | 1.30E-24 |
| PF00177.20 | Ribosomal_S7 | 88 | 139 | 4.20E-07 |
| PF00252.17 | Ribosomal_L16 | 135 | 171 | 1.40E-07 |
| PF00238.18 | Ribosomal_L14 | 168 | 215 | 1.90E-12 |
| PF00411.18 | Ribosomal_S11 | 214 | 291 | 8.10E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02950 | RP-S12, MRPS12, rpsL | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0015935 | Cellular Component | small ribosomal subunit |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.420 |
| SRR2545915 | Juvenile tuber | 0.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.860 |
| SRR5643514 | five period of Gastrodia elata | 4.360 | |
| SRR5643515 | five period of Gastrodia elata | 2.080 | |
| SRR5643524 | five period of Gastrodia elata | 1.850 | |
| SRR5643525 | five period of Gastrodia elata | 0.180 | |
| SRR5643528 | five period of Gastrodia elata | 1.990 | |
| SRR5643658 | five period of Gastrodia elata | 0.410 | |
| SRR5643659 | five period of Gastrodia elata | 3.210 | |
| SRR5643660 | five period of Gastrodia elata | 2.230 | |
| SRR5643661 | five period of Gastrodia elata | 1.860 | |
| SRR5643662 | five period of Gastrodia elata | 1.440 | |
| SRR5643663 | five period of Gastrodia elata | 1.830 | |
| SRR5643664 | five period of Gastrodia elata | 3.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.03 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |