Gene detail

Detail information of GWHGAAEX010223/evm.TU.scaffold_28.10

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1995	3.00E-98	Conserved Zn-finger protein
nr	gi\|743804282\|ref\|XP_010927154.1\|	1.01E-144	PREDICTED: ranBP2-type zinc finger protein At1g67325-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q8GZ43\|YZR3_ARATH	4.00E-101	RanBP2-type zinc finger protein At1g67325
trEMBL	tr\|M0RMX7\|M0RMX7_MUSAM	2.00E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P31030_001}
TAIR	AT1G67320_1	3.00E-98	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000027	676225	715937	+

Transcript Sequence
>GWHTAAEX010223 CGGAGAGATCTTAGCCCTCCAAAACAGCCCCGAGACTCGAAGTCCAGCAAAGATCAACACAAAACCCTAGTCTCTCTCTTCTCACATCTTCCAAGGAGGAGAGCAAGGCCGATACCACGCTTGCTTGCAATCATGTCTCAGGTGGATAATCGGAACTCCTTTGCTAGTAAGCGTGCCAGAACTGATGGCGGCCGGCGAGAAGATGACTGGACATGCCCTAGCTGCGGTAATGTCAATTTTTCTTTCAGGACGACATGCAACATGCACAACTGTTCTCAGTCAAGGCCTGTGGATCATAATGCAAAGTCTGCTCCAAAGTCCTTGCAAACTCCTCCGACCTTTGCATCCGCTGTTGGTTATATGGGATCATCCGCTCCCTCTTCAATGTATGGTGGTGCTCCATATGGATCATCTTTTTACAATGGCTCACCGTTGCCTCCCTATGACCTTCCTGCTGGAGGTTCTGGTTATCCTTATGGATATGGAGGTCGTCTTTCTGTAGGAAGCCCATACGGGCCAATGCACCACATGTCTGCCCCACCTGCTTACTCCAGTGGTTCAATGTTAGGGGCAGGTGGCATGTATGGCATGCCTCCACTAATGGATAGATATGGTATGGGAATGCATATGGGCCATGGCCCAATGGGAATGCCAAGACCAGGCACATTTCCTGAAGACGAGTTTCATAAGAAACCTGCAGATGCCGGACGTCATAATGATTGGATTTGCCCAAATTGTGGGAATAAAAATTTTGCCTTTCGAAATGTTTGTAACATGAGGAATTGCAATACTCCAAGGCCTGGAAACCAGGGTTCCAAATCCGACAACTCTATGGGTTCTAAAGCAAAAGTTTATGAGGGCAGCTGGAAGTGTCCGAAATGTAATAACATAAACTACTCATTTAGGACCAAATGCAATCGCCAACAGTGCGGCGCAGAAAGGCCACCCGAATCAAATCAGCCTCGTGGGTTGATTTCTGATGAAGATGAACAGGGTCCCAAATCTGAGAACTTCATGAGTTCTAAATCGAAGGCTTATGAGGGCAACTGGAAGTGTCCAAAGTGCAATAACATAAACTACGCATTCCGGACCAAATGCAACCGGCAGCACTGCGGCGCAGAAAGGCCTTCCGAGCTGAATCAGCCTTGCGGGCTGCCCTCCGACGAGGACGAGCAGTGAGTCATAGAACAAATTGTCTGGGTCGTCGAGAAGGTTCAGTTCAGAGTCATCTTCGAAGGTCCGTCCGTCCGTGTCTTGGGGTTTTGTGATGGTAGTTGTCGAGTTCATTTCGATCATTTCGAGTATAGCGCCTTCTTATTGTTAATTTTTATGGAATTTTTCGGTCTCTACCATTTAGTTGTTTTGTTAGTGCTTTGTGCAACTATTTCTAGACGACGGCACTTCTTCTCAGTTACTCTCGAAACTCTTTTTATTCTTGCTATTAGATTACACTATTGTGATATGTATTATTCGATTGTGGATGTGTTTGAATTTTGTGTTTTGACCAGACCGGTAATTATGTGGAGTGTCTTTGTTTACAAAATTGGAATTTATTTTCGGAGGTATTTAGCAAAAGAGTTGTGCTTCAGGAACACAAGAACAAAGTGATTGTACACTGCACTTTTGCACTTGCCTATTTGTAGTGTAGTGTTTTTCTCCTTGGAATACTTCGTCTATTTCATATTGTCCAATTTAGTTTCATCAGGCTAACAGAGCTAACATAGCTTAAGGGTGCCAATTATGTAAAGTTCAG

Network for GWHGAAEX010223

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00641.17	zf-RanBP	22	44	6.10E-06
PF00641.17	zf-RanBP	196	223	5.10E-05
PF00641.17	zf-RanBP	242	272	2.80E-07
PF00641.17	zf-RanBP	303	333	2.10E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	119.280
SRP064423	SRR2545915	Juvenile tuber	135.770
SRP108465	SRR5643513	five period of Gastrodia elata	112.080
	SRR5643514	five period of Gastrodia elata	98.630
	SRR5643515	five period of Gastrodia elata	115.030
	SRR5643524	five period of Gastrodia elata	98.410
	SRR5643525	five period of Gastrodia elata	100.260
	SRR5643528	five period of Gastrodia elata	115.560
	SRR5643658	five period of Gastrodia elata	88.210
	SRR5643659	five period of Gastrodia elata	178.550
	SRR5643660	five period of Gastrodia elata	197.700
	SRR5643661	five period of Gastrodia elata	209.260
	SRR5643662	five period of Gastrodia elata	196.060
	SRR5643663	five period of Gastrodia elata	178.580
	SRR5643664	five period of Gastrodia elata	216.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	125.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	166.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	130.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	154.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	130.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	148.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	136.450
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	146.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	124.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	127.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	130.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	130.490
SRP279888	Gastro	Gastrodia elata tuber	184.77
	Juven	Juvenile tuber	120.87
	Mother_Gastro	Mother tuber of Gastrodia elata	69.88
	Mother_Juven	Mother tuber of Juvenile	77.82