Detail information of GWHGAAEX010225/evm.TU.scaffold_28.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262194105|ref|YP_003265314.1| | 3.00E-14 | histone-arginine N-methyltransferase [Haliangium ochraceum DSM 14365] |
| KOG | KOG0822 | 0 | Protein kinase inhibitor |
| nr | gi|672145972|ref|XP_008796923.1| | 0 | PREDICTED: protein arginine N-methyltransferase 5 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q6YXZ7|ANM5_ORYSJ | 0 | Protein arginine N-methyltransferase 5 |
| trEMBL | tr|D7SU76|D7SU76_VITVI | 0 | Protein arginine N-methyltransferase {ECO:0000256|PIRNR:PIRNR015894} |
| TAIR | AT4G31120 | 0 | SHK1 binding protein 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000027 | 807044 | 829164 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010225
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF17285.1 | PRMT5_TIM | 37 | 311 | 4.80E-75 |
| PF05185.15 | PRMT5 | 317 | 486 | 4.40E-71 |
| PF17286.1 | PRMT5_C | 489 | 655 | 1.80E-52 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02516 | PRMT5, HSL7 | RNA transport | map03013 |
| MAPK signaling pathway - yeast | map04011 | ||
| Cell cycle - yeast | map04111 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0035246 | Biological Process | peptidyl-arginine N-methylation |
| GO:0006479 | Biological Process | protein methylation |
| GO:0008168 | Molecular Function | methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.290 |
| SRR2545915 | Juvenile tuber | 14.470 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.990 |
| SRR5643514 | five period of Gastrodia elata | 20.160 | |
| SRR5643515 | five period of Gastrodia elata | 14.570 | |
| SRR5643524 | five period of Gastrodia elata | 15.700 | |
| SRR5643525 | five period of Gastrodia elata | 14.840 | |
| SRR5643528 | five period of Gastrodia elata | 21.410 | |
| SRR5643658 | five period of Gastrodia elata | 8.350 | |
| SRR5643659 | five period of Gastrodia elata | 15.710 | |
| SRR5643660 | five period of Gastrodia elata | 14.240 | |
| SRR5643661 | five period of Gastrodia elata | 15.710 | |
| SRR5643662 | five period of Gastrodia elata | 17.510 | |
| SRR5643663 | five period of Gastrodia elata | 15.970 | |
| SRR5643664 | five period of Gastrodia elata | 13.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.15 |
| Juven | Juvenile tuber | 16.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.52 | |
| Mother_Juven | Mother tuber of Juvenile | 7.46 |