Detail information of GWHGAAEX010226/evm.TU.scaffold_28.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|159898923|ref|YP_001545170.1|7.00E-41DNA-(apurinic or apyrimidinic site) lyase [Herpetosiphon aurantiacus DSM 785]
nrgi|672156755|ref|XP_008798062.1|2.50E-123PREDICTED: protein ROS1 isoform X1 [Phoenix dactylifera]
Swissprottr|Q9SJQ6|ROS1_ARATH2.00E-15Protein ROS1
trEMBLtr|M0UBE4|M0UBE4_MUSAM1.00E-122Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP22360_001}
TAIRAT3G478303.00E-63DNA glycosylase superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000027833110838416+
Transcript Sequence

Network for GWHGAAEX010226

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00730.24HhH-GPD782229.50E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10773NTH Base excision repair map03410

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0006284Biological Processbase-excision repair
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.530
SRR2545915Juvenile tuber11.630
SRP108465SRR5643513five period of Gastrodia elata13.920
SRR5643514five period of Gastrodia elata15.200
SRR5643515five period of Gastrodia elata12.730
SRR5643524five period of Gastrodia elata12.610
SRR5643525five period of Gastrodia elata14.510
SRR5643528five period of Gastrodia elata8.840
SRR5643658five period of Gastrodia elata15.650
SRR5643659five period of Gastrodia elata15.700
SRR5643660five period of Gastrodia elata14.310
SRR5643661five period of Gastrodia elata15.630
SRR5643662five period of Gastrodia elata15.540
SRR5643663five period of Gastrodia elata14.920
SRR5643664five period of Gastrodia elata14.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.960
SRR6049655Rhizomagastrodiae_C368-T10_good_114.720
SRR6049656Rhizomagastrodiae_C368-T07_good_118.030
SRR6049657Rhizomagastrodiae_C368-T07_good_112.550
SRR6049658Rhizomagastrodiae_C368-T04_good_19.610
SRR6049659Rhizomagastrodiae_C368-T04_good_16.970
SRR6049660Rhizomagastrodiae_C368-T01_good_112.520
SRR6049661Rhizomagastrodiae_C368-T04_good_111.960
SRR6049662Rhizomagastrodiae_C368-T01_good_114.510
SRR6049663Rhizomagastrodiae_C368-T01_good_114.040
SRR6049664Rhizomagastrodiae_C368-T10_good_117.050
SRR6049665Rhizomagastrodiae_C368-T10_good_117.050
SRP279888GastroGastrodia elata tuber 16.78
JuvenJuvenile tuber14.02
Mother_GastroMother tuber of Gastrodia elata 8.77
Mother_JuvenMother tuber of Juvenile 6.59