Gene detail

Detail information of GWHGAAEX010228/evm.TU.scaffold_28.16

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743766474\|ref\|XP_010913477.1\|	7.04E-41	PREDICTED: uncharacterized protein LOC105039151 [Elaeis guineensis]
Swissprot	tr\|Q9FG05\|GIS2_ARATH	1.00E-15	Zinc finger protein GIS2
trEMBL	tr\|D7TNK9\|D7TNK9_VITVI	5.00E-35	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32082.3}
TAIR	AT5G06650	3.00E-15	C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000027	869749	872765	+

Transcript Sequence
>GWHTAAEX010228 ATAACAAAAGAGAGAGAGAGAGAGTGGTGCGCAAATTTCAAAATAATTACATCAACCCTCTTTTTACACCTAAACTTGACATGTCATAAAGACTAGTAATAAGATATCTTTAGATGTATAACAAAACTTAATAAGCCGTAAGTTGAATGAAAAAATGACTGTCAAAAAAGGCTAATGTTCACGAACAACTCCTATCCGATTCGTTAAGAAACTTGAGTTCGACTTGACCTATAAACTAGTGACATATTTGAATCTCAATTATTTATTGACAATAATATTAAGAAGTTTCTAAGGCACATTCTGAATAGAGGACAACAATGGCCAACCATATAAGAGTTTTTTTGATAACCAAAAATTCAAAGGGGCTAGCTCACTAATCTCTTCATAGAAAAACAGTTTTGTAGCATGAATCAATAGGTGAGGAACAAGAGACCACTTAACCATCCATTTAAATGCAGAGACAAAATGTAACTTTTAAATGTAATTTTTACACTTTACAGTGGATATATATATTTCATCCATGCATCTAATGGATATTTGTGAGAAATGCATTGAAATAAAATTGATAGTAATCTTTAATTTTACATTCATATGAATGATTGGTGAGTTGCAAAATCAAAAAATAACTCTTAACGAAAGAGCGGCGAGAGATATGTAGTGCAAAGATTTTCTATCTAAAGGAATTGTGTCCACTCTCTATCTACTTCTCTCTCTCTCTCTTATATATGAGTGAACTTATTTAAAAAGATTGCTAAAGAACATAGCTTTTCAGCCATAGCACTAATATGCTAATCTTGATGCACTTGGCCCGAGACCACTTTACCAAAGCCCCCACCCATCCCACATTAACTAAGGTTGGTGGAGGGGCAACCTATTCAGTAACATCACATTTGTCAATACAATAAAAGCAATGATACGATCGCCAAACAACATCCATAGAGAAAACAACCCTTCAATAGCCAAATGTAAGCCCATCATATGTTGCCATCCTCACCACAAAAATTGAGGCTCCCAAATCAAGGAGCACAGCATCCACCAATAGTGATGAGAAAAACTGACCAACCTTGGAAATTATGTGACAATCACTCTGTCTCACAAGTGTAGAAAATTAAGCCCCCTTCAATGAACATAGGGGAGAACAATTAAGTGAAGAAGAAACATAGATAACGGATATATGCCACTAGAGGCAACCACTTACCGAACTTCAAAGAAATCTAAAACAAATATCATGTTCAGCGCACTTTCATTTTCTAAACTTTTAATAATAGTTGTTATGCGATACTATGTTTATCCTGCGCATACGCTCCAGTTCATATTTAGCCATTAAAGCTATAATATTCTACTGATTCCATAGCTAGTTTTTTTCCCATGTTAAATCAGCTTCAACTGTACTTTTAACCAACTAGCAAACCTTGGTTTCTTTTGGAATAAGACACATATCAGCGCCATTAGACAGCTATCTCTACTTTTTAATAAAATAAATGTTTGGCTAACGTGTGAGCTTCCTACGTAAAGCTTTATAAAACAGGTTGCTTTATGGCTCAATGAAGCTCACTCCTCAAAGGCAAAAATAAGTCATATCATATGCTTTTAATTGAGGAAGTGAGGAGATGCAGTCCTACTTTTTGACATTCAAAGATTGCAAGATCTCCAATAACGCCACCTTCAAGGTGTTAAATAATTGTAGTAAATATCAAATGGCATTAATCACTATAAAGTTATATATTATCTTAATACCTTATAGATCAGAAGCATTTCAAGTAGGCTTTGGTGGTTTTTCTTTTGCATATGATATGCAAATGATTGAGGCTACAGTCTGCTGACCAGATAGGTATGACTATCTTTTATTACACTTTTCTAAAATTGACTCCCCATGAGAATGCTTTTCTTTTTTTATCAATAATATCTTTTCCAGAGAGATATTACTGTATTATATATAATGATAGATATACATGACCTAAAAATAATAGTTCAGTAATTATATGAGAAAACGGAGAAGGATTCCAGCTCATCTTCGCAGAATCTAATCACAGCAACGATATGGGAGGAGAGAAGAAGTTCAGATTATTTGGATTTGAGTTTGAACCGCATAAGCTAGTTTTGGATGATGACAGCCACAGCAAGCCCTGTGAAGCTATGGATCAGTATCGAAGCCAAGAAGTTGGCAAGGAAAGGAAGTATGGATGCCAATTCTGCTTGAAAGAGTTCCCAAACTCGCAGGCATTAGGAGGTCATCAAAATGCGCATAAGAAGGAAAGAATGAAGAAAAAAAGGCTGGAATTGGAGGCAAGAAAGGCAAGTATCAACTGCTACATGCAGCCCCTTATCAAAAGTCATGGCTCAGTGTACACGTGTGTTCTGCCATGGTTCCATGAACTATCTCCATTGGCACTTGCCAAGCCAAGGCTTCCTGAATCTCAGGAAAACTTGAAAAATGGGATCTTTGCCGCATCAAGGTCAACAGCAGGTTCACCCTGTGCTCAGCAGAGTGCATGCCTGCTTGGCATGGTGCAGCCAAAGAGTGGTTACAATGTAAGCTGGCCAGTAATTATGAAGCCAACGTTAGGTGCGAAGGCCAATACCAACGGATTGGATCTTCAGCTGGGACTCAACCTGCACTCCAATCCCTCCAGCTCTTCCTCATAAAGTAGTAGAGTGTGAGAGTCTCGTTATGGTAAAAAGTAACACTATTCTATGTAAATGTAAGATTAATGGTTTGGTTGTGTTTATCTAAATTCCTAGTGAAAGGGCTCCAGATTTTTGGTTAAATCTTTTGATGGCAAATAATAGATAGTAAGTTGTGAAATTTCCATGAAGAACAGTCTTCTCACTGAAGTTATACATGGCAACAGGGTTAGCTCCTGGTGTTGCTGAAGCTTTCCTATGGAAGACTGCTAATTTATAAATAAAACGATCATTTTTTACCTTTTTGGTTTGAACCATTTGCAAAGGAATATTGAAGTAATTTCAAATAGAAATTTGTCAAAAATAATCCAACTTTTTGTGTGTATTCAACA

Network for GWHGAAEX010228

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.110
SRP064423	SRR2545915	Juvenile tuber	0.860
SRP108465	SRR5643513	five period of Gastrodia elata	0.430
	SRR5643514	five period of Gastrodia elata	0.750
	SRR5643515	five period of Gastrodia elata	0.860
	SRR5643524	five period of Gastrodia elata	0.560
	SRR5643525	five period of Gastrodia elata	0.620
	SRR5643528	five period of Gastrodia elata	0.380
	SRR5643658	five period of Gastrodia elata	0.230
	SRR5643659	five period of Gastrodia elata	0.620
	SRR5643660	five period of Gastrodia elata	0.490
	SRR5643661	five period of Gastrodia elata	0.710
	SRR5643662	five period of Gastrodia elata	0.840
	SRR5643663	five period of Gastrodia elata	0.920
	SRR5643664	five period of Gastrodia elata	0.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.140
SRP279888	Gastro	Gastrodia elata tuber	1.29
	Juven	Juvenile tuber	1.70
	Mother_Gastro	Mother tuber of Gastrodia elata	0.65
	Mother_Juven	Mother tuber of Juvenile	1.49