Detail information of GWHGAAEX010229/evm.TU.scaffold_28.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1990 | 0 | Poly(A)-specific exoribonuclease PARN |
| nr | gi|672140000|ref|XP_008793805.1| | 0 | PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q6YYA3|CRS1_ORYSJ | 2.00E-108 | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (Precursor) |
| trEMBL | tr|M0REM5|M0REM5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P01980_001} |
| TAIR | AT3G01370 | 0 | CRM family member 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000027 | 885587 | 981215 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010229
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01985.20 | CRS1_YhbY | 159 | 242 | 1.80E-25 |
| PF01985.20 | CRS1_YhbY | 375 | 459 | 1.10E-19 |
| PF01985.20 | CRS1_YhbY | 570 | 656 | 8.70E-20 |
| PF01985.20 | CRS1_YhbY | 865 | 950 | 2.30E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.440 |
| SRR2545915 | Juvenile tuber | 41.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.330 |
| SRR5643514 | five period of Gastrodia elata | 9.450 | |
| SRR5643515 | five period of Gastrodia elata | 9.930 | |
| SRR5643524 | five period of Gastrodia elata | 9.830 | |
| SRR5643525 | five period of Gastrodia elata | 10.110 | |
| SRR5643528 | five period of Gastrodia elata | 9.380 | |
| SRR5643658 | five period of Gastrodia elata | 10.690 | |
| SRR5643659 | five period of Gastrodia elata | 11.740 | |
| SRR5643660 | five period of Gastrodia elata | 12.500 | |
| SRR5643661 | five period of Gastrodia elata | 11.560 | |
| SRR5643662 | five period of Gastrodia elata | 11.730 | |
| SRR5643663 | five period of Gastrodia elata | 12.190 | |
| SRR5643664 | five period of Gastrodia elata | 12.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.05 |
| Juven | Juvenile tuber | 17.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.65 | |
| Mother_Juven | Mother tuber of Juvenile | 15.28 |