Detail information of GWHGAAEX010232/evm.TU.scaffold_28.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743783410|ref|XP_010921401.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Elaeis guineensis] |
| Swissprot | tr|Q9FXA9|PPR83_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At1g56570 |
| trEMBL | tr|M5W7M0|M5W7M0_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ09704.1} (Fragment) |
| trEMBL | tr|M5W7M0|M5W7M0_PRUPE | 2.00E-23 | Uncharacterized protein {ECO:0000313|EMBL:EMJ09704.1} (Fragment) |
| TAIR | AT1G56570 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000027 | 1396349 | 1402531 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010232
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 25 | 48 | 0.11 |
| PF13041.5 | PPR_2 | 49 | 95 | 7.40E-10 |
| PF01535.19 | PPR | 124 | 149 | 1.2 |
| PF01535.19 | PPR | 153 | 179 | 0.03 |
| PF01535.19 | PPR | 226 | 250 | 0.069 |
| PF13041.5 | PPR_2 | 251 | 299 | 2.10E-08 |
| PF01535.19 | PPR | 326 | 351 | 0.0032 |
| PF01535.19 | PPR | 354 | 384 | 5.30E-09 |
| PF01535.19 | PPR | 394 | 416 | 0.031 |
| PF01535.19 | PPR | 426 | 450 | 0.32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.210 |
| SRR2545915 | Juvenile tuber | 4.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.160 |
| SRR5643514 | five period of Gastrodia elata | 3.090 | |
| SRR5643515 | five period of Gastrodia elata | 3.620 | |
| SRR5643524 | five period of Gastrodia elata | 2.850 | |
| SRR5643525 | five period of Gastrodia elata | 6.630 | |
| SRR5643528 | five period of Gastrodia elata | 4.460 | |
| SRR5643658 | five period of Gastrodia elata | 5.430 | |
| SRR5643659 | five period of Gastrodia elata | 6.670 | |
| SRR5643660 | five period of Gastrodia elata | 7.040 | |
| SRR5643661 | five period of Gastrodia elata | 5.460 | |
| SRR5643662 | five period of Gastrodia elata | 12.030 | |
| SRR5643663 | five period of Gastrodia elata | 10.430 | |
| SRR5643664 | five period of Gastrodia elata | 13.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.48 |
| Juven | Juvenile tuber | 1.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.39 | |
| Mother_Juven | Mother tuber of Juvenile | 1.92 |